_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-20
 Query name: gi|30231240|ref|NP_840079.1| 15 kDa selenoprotein precursor [Danio rerio] >gi|172046121|sp|Q802F3.2|SEP15_DANRE RecName: Full=15 kDa selenoprotein; Flags: Precursor [Danio rerio] >gi|29165356|gb|AAO65272.1| 15 kDa selenoprotein SeP15 [Danio rerio]
 Query range: 17-153  (total 153)

 Target: /data/www-rg/seblastian_results/776386642/tempfiles/temptarget.fasta
 Chromosome: gi|398920364|gb|JH767859.1|:subseq_1826741,128365_ Strand: +
 Positions:
 -Exon 1  50000        50167
 -Exon 2  69567        69630
 -Exon 3  75951        76000
 -Exon 4  78237        78365

 Redox box: no

Query   LASYGAELSSEACRELGFSSNLLCSSCELLGQFSLNQLDLPCRQCCQEEAQLENRK <---Intron---> LYPGAILEVCGUKLGRFPQVQA <---I
        ////||| |||||||||||||||||||/||||||| |||  || ||||||| | /| <  19399bp   > || ||||||||||||||||||| <   6
Target  VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFSLLQLDPDCRGCCQEEAQFETKK                LYAGAILEVCGUKLGRFPQVQA      
        gtgtgggtttggtagtgttaatctattgccgctaccccgcgtcgttcgggctgaaa                ctgggacggtgtacgatccgcg      
        tcctgcatccacggatgtcgattggcgattgatgttatacagggggaaacatacaa                tacgcttatgggatggtcata       
        gtgcgagttagtcagacccccgccccttttagccgtggttctaactgaaaatacag                gtaatttactaaagggctacg       
                                                                                           *                

Query   ntron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
        320bp   > |||||||||||||||| <   2236bp   > |||||||||||||||||||||||||||||||||||||||||||
Target            FVRSDKPKLFRGLQIK                YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
                  tgaagacactagccaa                tgcgtgcgcactggagaagggcaacataagagggtcagatgca
                 cttggaacattggtata                atggcacttattaaagatcaatgttagacagtaattgaatagt
                 ttcgttacaccaagacg                ttctactaagtgtctgcttaaacccagcactaagcgtaggaca
                                                                                             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 589 ; UGA-SECIS: 796

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|398920364|gb|JH767859.1|:subseq_1826741,128365_ Strand = + Positions = 78955 - 79032
 Found by:  Infernal (score=31.95) Covels (score=26.14)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -20.36

         ..(((((((.......(((((((((((((((...............))))))))).)))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         (((((((((((.....{[[((((((((((((...............))))))))).)))]]}.....-)-))))))))))
 target  CGAAGAUUUGCAUUAAUGAGGACUACACAGAAAACCGUUUUGAGGAUUUGUGUGGAUCUGAUAUUUA-G-CAAAUUUUUG
                         ****           ^^^                        ****                  