_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-25
 Query name: gi|169646710|ref|NP_001108630.1| glutathione peroxidase 3 precursor [Equus caballus]
 Query range: 1-226  (total 226)

 Target: /data/www-rg/seblastian_results/678774533/tempfiles/temptarget.fasta
 Chromosome: gi|398923363|gb|JH767748.1|:subseq_26114164,102486_ Strand: -
 Positions:
 -Exon 1  57198        57284
 -Exon 2  52336        52489
 -Exon 3  51177        51294
 -Exon 4  50626        50725
 -Exon 5  49976        50194

 Redox box: no

Query   MARLFRASCLLSLLLAGFVPPSRGQEKSK <---Intron---> TDCHAGVSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLTGQYVE <-
        ||||||||||||||||||||||||||||| <   4708bp   > |||| |||||||/||||||||/|||||||||||||||||||||||||||||| < 
Target  MARLFRASCLLSLLLAGFVPPSRGQEKSK                TDCHPGVSGTIYDYGALTIDGQEYIPFKQYAGKYILFVNVASYUGLTGQYVE   
        agcctcgttcctcccggtgccacgcgata                agtccggagaatgtggcaaggcgtactactggatactgaggattgtagctgg   
        tcgttgccgttctttcgttccgggaaaca                cagacgtggctaaagctctagaaatctaaacgaattttatcgaggtcgaat    
        gcggcgacctccgcgccccggcgaggggg                gccttggtccctttacccctgagccctggttcaccccccgcccacgacgct    
                                                                                                *           

Query   --Intron---> LNALQEEFAPFGLVILGFPSNQFGKQEPGENSEIPLTLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL
          1041bp   > ||||||| |||||||||||||||||||||/||||||||| <   451bp    > ||||| ||||||||||||||||||||||||||
Target               LNALQEELAPFGLVILGFPSNQFGKQEPGDNSEIPLTLK                YVRPGRGFVPNFQLFEKGDVNGEKEQKFYTFL
                     cagccggcgctgcgacgtcaactgacgcggatgaccaca                tgccgagtgcatcctgagggaggagcattatc
                    atactaaatcctgttttgtcgaatgaaacgaacatctcta                atgcgggttcatattaagatagaaaaatactt
                    agtaagagtaattgctgcccccacaagaaaccggcaccc                gtcaatgcccctcactgactgtggagggccacg
                                                                                                            

Query   K <---Intron---> NACPPTSELLGSPDRLFWEPMKIHDIRWNFEKFLVGPDGKPIMRWYHRTTVNTVKMDILAYMRREAALAARGK
        | <   431bp    > |/||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||/||| | ||
Target  K                NSCPPTSELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGKPIMRWYHRTTVNTVKMDILAYMRRQAALRAMGK
        a                attccatgccgtcgccttgcaaacgactatgatcggcggacaacttccaagaagaagacgtaaccggcagaga
        a                acgccccattgccggttgactataatggataatttgcagacttggaagcctactatattcatggacctgctga
        g                ccttccggcgcatccccgacggctcccgctggcgggactaccgcgccgcacctcggccgccggggacggcggg
                                                                                                  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 628 ; UGA-SECIS: 1087

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|398923363|gb|JH767748.1|:subseq_26114164,102486_ Strand = - Positions = 49347 - 49273
 Found by:  Infernal (score=17.51) Covels (score=27.37)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -15.76

         ..(((((((.......(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         (({(((([(.--....([[{(({(((({(((.....---.......)))}))))}))}]]).......-...)]))))}))
 target  GGGUGGCAUC--UCCAUGAAGGAGGGGCCCGAAGCC---CUGUGGGCGGACCUCCCCAGAGCCUGUCC-AGAGGGCCAGCC
                         ****           ^^                        ****                    
