_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-62
 Query name: gi|47523868|ref|NP_999572.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial precursor [Sus scrofa] >gi|172045843|sp|P36968.3|GPX4_PIG RecName: Full=Phospholipid hydroperoxide glutathione peroxidase, mitochondrial; Short=PHGPx; AltName: Full=Glutathione peroxidase 4; Short=GPx-4; Short=GSHPx-4; Flags: Precursor [Sus scrofa] >gi|14717813|gb|AAA31098.2| phospholipid hydroperoxide glutathione peroxidase [Sus scrofa]
 Query range: 28-197  (total 197)

 Target: /data/www-rg/seblastian_results/396701672/tempfiles/temptarget.fasta
 Chromosome: gi|398920950|gb|JH767828.1|:subseq_4736044,101042_ Strand: -
 Positions:
 -Exon 1  50945        51042
 -Exon 2  50717        50861
 -Exon 3  50476        50627
 -Exon 4  50353        50377
 -Exon 5  50102        50161
 -Exon 6  50000        50029

 Redox box: no

Query   MCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR <---Intron---> GYVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGRQ <-
         ||/||||||||||||||||||||||||||||| <    83bp    > |/|||||||||||||| ||||||||||||||||||||||||||||||| < 
Target  QCAARDDWRCARSMHEFSAKDIDGHMVNLDKYR                GFVCIVTNVASQUGKTAVNYTQLVDLHARYAECGLRILAFPCNQFGRQ   
        ctggcggtctgctacgttgagaggcagacgatc                gtgtagaaggtctgaaggataccggccgctggtgtcacgtctactgac   
        agccgaagggcgctaatccaatagattataaag                gttgttcatccaggacctaacattatacgacaggtgttctcgaatgga   
        gtaccccgctgccgcgcacgcccgcgtcgcgt                gccgcccccgccaacagcacctgcccgccactgctaccgcccccgcggg   
                                                                     *                                      

Query   --Intron---> EPGSDAEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGMLGN <---Intron---> AIKWNFTK <---Intron-
           89bp    > ||||/||||||||||||||||||||||||||||||||||| |||||||||| <    98bp    > |||||||| <   191bp  
Target               EPGSNAEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKAQPKGRGMLGN                AIKWNFTK            
                     gcgtaggaagtgggtagatgataaatgaggggccctataagccagagacga                gaatataa            
                     acgcacataatccgaatatattgatgtagaacactgagtacacagggttga                ctagatca            
                     gagtcggcagccgccccactgccgccgcgccgcgggggggtgtgggcgga                cccggcccg            
                                                                                                            

Query   --> FLIDKNGCVVKRYGPMEEPQ <---Intron---> VIEKDLPCYL
          > |||||||||||||||||||  <    72bp    > ||||||||||
Target      FLIDKNGCVVKRYGPMEEPL                VIEKDLPCYL
            tcagaagtggactgcaggcc                gagagccttc
            tttaaaggttagagctaact                ttaaatcgat
            cgccgcccgggccccgggcg                gaggcgccct
                                                          
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 54 ; UGA-SECIS: 426

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|398920950|gb|JH767828.1|:subseq_4736044,101042_ Strand = - Positions = 49945 - 49873
 Found by:  Infernal (score=23.41) Covels (score=35.91)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -16.96

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({({(({((......([[{((((((((({(...............)})))))))))}]])----..-))}))})}).
 target  UUCCACCCGGCACCCAUGACGGUCGGCCUGAAAACCAGCGCGCUGGUGGGGCCGGCCCGAG----AA-CCCGGCGUGC
                         ****           ^^^                       ****                 
