_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-26
 Query name: gi|260081569|gb|ACX31205.1| deiodinase 1 [Ovis aries]
 Query range: 1-146  (total 146)

 Target: /data/www-rg/seblastian_results/85379701/tempfiles/temptarget.fasta
 Chromosome: gi|398921711|gb|JH767796.1|:subseq_6226177,115432_ Strand: +
 Positions:
 -Exon 1  50285        50321
 -Exon 2  57972        58115
 -Exon 3  63149        63348
 -Exon 4  65367        65423

 Redox box: no

Query   SGERCSIWDFMQG <---Intron---> NRPLVLNFGSCTUPSFIFKFDQFKRLIEEFGSVADFLIIYIEEAHASD <---Intron---> GWAFKNN
        ||/||/||||||| <   7650bp   > ||||||||||||||||/|||||||||||/| |/||||||||||||||| <   5033bp   > |||||||
Target  SGQRCNIWDFMQG                NRPLVLNFGSCTUPSFLFKFDQFKRLIEDFTSIADFLIIYIEEAHASD                GWAFKNN
        tgcataatgtacg                aactgcatgatatcttctatgctaacaggtataggtcaatagggcgtg                gtgtaaa
        cgaggatgatta                gagctttatgggcgcctttataatagttaatcctcattttataacacc                aggctaaa
        aaggcccgccga                ccgagggtcattcatgttcatcacgattacttccgttccccaaaacaa                tcgttgcc
                                                 *                                                          

Query   VDIKNHRNLQDRLRAAHLLLDRSPQCPVVVDTMKNQSSSCYAALPERLYVLQEGRILYK <---Intron---> GKPGPWNYHPEEVRAVLEK
        | |/|||||||||||| |||||||||||||||||||||  |||||||||||/||||||| <   2018bp   > |||||||||||||||||||
Target  VVIRNHRNLQDRLRAARLLLDRSPQCPVVVDTMKNQSSQLYAALPERLYVLREGRILYK                GKPGPWNYHPEEVRAVLEK
        ggaaaccaccgcccggccccgaacctcggggaaaacaacctggccgactgccggaacta                gacgctatccgggcggcga
        tttgaagataagtgccgtttaggcagctttactaaaggatacctcagtattgaggttaa                gacgcgaaacaatgcttaa
        gccgtcgtcgccggaccgggcgccgcggggcgggcgccgccgagcggctgcggcgcccg                tatctgcctagactttgag
                                                                                                      
 Sequence until next stop: 
CTCCACAGTTAA
 L  H  S  * 

 Distance CDS-SECIS: 963 ; UGA-SECIS: 1323

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|398921711|gb|JH767796.1|:subseq_6226177,115432_ Strand = + Positions = 66387 - 66455
 Found by:  Infernal (score=29.02) Covels (score=20.88)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -9.74

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((.--....{[[{(({((((((..........-----....))))))}))}]]}..--....))))))...
 target  UUCAUAUUUG--UUUAUGACGGCCACAGCCUAAAGUGCA-----CACAGCUGUGACUUGAUUU--GAAAAAAUGUUUU
                         ****           ^^^                       ****                 
