_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-75
 Query name: gi|169636441|ref|NP_001108607.1| glutathione peroxidase 2 [Canis lupus familiaris]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/667216444/tempfiles/temptarget.fasta
 Chromosome: gi|398923836|gb|JH767740.1|:subseq_11506680,103113_ Strand: -
 Positions:
 -Exon 1  52892        53113
 -Exon 2  50000        50347

 Redox box: no

Query   MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2544bp   > ||||||||||
Target  MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcactggcgtctactgcc                gatcaggaca
        tcatcactaatgctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtcttgcccctttccgtgggatctacacggggtgcgcgcacaccgcccgccggacctcgcggtcccgccgtatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPLSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        |||||||||||||||||||||||||||/||||||||||||||||||/|||||||||||||||||||/|||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLVQKCEVNGQNQHPVFAYLKDKLPYPYDDPVSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacgcatggagcacccgtgtcagacctctggcgtcaagcataatacgcctggttatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcctatacatag
        tcgccctgtacgcctctcagtggttgcgttccccggcgccctctcatccgatcgcttgcggccatgcgctggcttgggggccacccccccccctgtccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 224 ; UGA-SECIS: 674

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|398923836|gb|JH767740.1|:subseq_11506680,103113_ Strand = - Positions = 49775 - 49711
 Found by:  Infernal (score=34.94) Covels (score=28.43)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -25.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---(...([[{(((((({(((......-..-----...)))}))))))}]])----...))))))))..
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAACC-UG-----UAUGGGCGGUGUCUGAG----ACGUGUGAAGGGC
                         ****           ^^^                       ****                 
