TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000141_2.0 # Protein # Thioredoxin reductase 3 (TR3) # Human (Homo sapiens) (698 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01025334.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 140 6e-33 BADN01057254.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 86 2e-23 BADN01025333.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 84 4e-15 BADN01034111.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 81 4e-14 BADN01035419.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 56 2e-06 BADN01034113.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 56 2e-06 BADN01055795.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 51 5e-05 BADN01034114.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 50 9e-05 BADN01024054.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 47 9e-04 BADN01034115.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 46 0.002 >BADN01025334.1 Thunnus orientalis DNA, contig: superscaffoldBa00000523_0006, whole genome shotgun sequence Length = 11646 Score = 140 bits (354), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 66/79 (83%), Positives = 71/79 (89%) Frame = -1 Query: 378 TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGS 437 TSDDLFSL YCPGKTLV+GASYVALEC GFLAG GLDVTVMVRSILLRGFDQ+MA + G Sbjct: 3201 TSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSILLRGFDQDMANRAGE 3022 Query: 438 YMEQHGVKFLRKFIPVMVQ 456 +ME+HGVKFLRKFIPV V Sbjct: 3021 HMEEHGVKFLRKFIPVKVS 2965 Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/138 (47%), Positives = 77/138 (55%), Gaps = 48/138 (34%) Frame = -1 Query: 253 GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ-------------------- 292 GLGGTCVNVGCIPKKLMHQ ALLG AL D+RKFGWE+++ Sbjct: 4539 GLGGTCVNVGCIPKKLMHQTALLGTALQDARKFGWEFDETGEGSEQRPRRSRRGDIAPAC 4360 Query: 293 ----------------------------VRHNWETMTKAIQNHISSLNWGYRLSLREKAV 324 V+HNWETM A+ N+I SLNWGYR++LR+K V Sbjct: 4359 RGKSEASLFRNHLLSFH*FH*WVSVCPPVKHNWETMKTAVNNYIGSLNWGYRVALRDKNV 4180 Query: 325 AYVNSYGEFVEHHKIKAT 342 YVN+Y EF+E HKIK T Sbjct: 4179 NYVNAYAEFIEPHKIKVT 4126 Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 37/54 (68%), Positives = 46/54 (85%) Frame = -1 Query: 511 KSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKC 564 ++GKIPVND EQTNVP++YA+GDILE K ELTPVAIQ+G+LLA+RL+ S K Sbjct: 993 RNGKIPVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGRLLARRLYAGSTLKV 832 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/39 (82%), Positives = 38/39 (97%) Frame = -3 Query: 340 KATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT 378 +ATNK+G+ET+YTAA+FV+ATGERPRYLGI GDKEYCIT Sbjct: 3760 QATNKRGKETFYTAAKFVLATGERPRYLGIPGDKEYCIT 3644 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 23/38 (60%), Positives = 30/38 (78%) Frame = -1 Query: 157 DDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQA 194 +DG QE+L E+T QKTVPN+F+NK H+GGCD+T Q Sbjct: 7614 EDGTNYQEMLLEMTGQKTVPNVFINKTHLGGCDKTMQV 7501 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/25 (88%), Positives = 25/25 (100%) Frame = -2 Query: 229 EAAILGKKVMVLDFVVPSPQGTSWG 253 EAA+LGKKVMVLDFVVP+P+GTSWG Sbjct: 4739 EAAMLGKKVMVLDFVVPTPKGTSWG 4665 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 26/32 (81%) Frame = -2 Query: 455 VQQLEKGSPGKLKVLAKSTEGTETIEGVYNTV 486 +++LE G+PGKLKV AKSTE E +EG YNTV Sbjct: 2645 IEELEAGTPGKLKVTAKSTETDEILEGEYNTV 2550 >BADN01057254.1 Thunnus orientalis DNA, contig: superscaffoldBa00001857_0006, whole genome shotgun sequence Length = 19607 Score = 85.9 bits (211), Expect(2) = 2e-23, Method: Compositional matrix adjust. Identities = 41/70 (58%), Positives = 55/70 (78%) Frame = +2 Query: 378 TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGS 437 +S+DL SLP+ PG+TLV+G S LECAGFL+G GL VTVM++ LL GFDQ+MA+K+ + Sbjct: 7838 SSEDLLSLPHSPGRTLVLGGSAEGLECAGFLSGLGLPVTVMLQPDLLPGFDQKMAQKIEN 8017 Query: 438 YMEQHGVKFL 447 +M GV+FL Sbjct: 8018 HMLVAGVEFL 8047 Score = 47.8 bits (112), Expect(2) = 2e-23, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Frame = +3 Query: 340 KATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT 378 + T+ G++ TA VIATG+RP+YLG+ GD++YC+T Sbjct: 7632 QVTDMNGRKRRLTAETLVIATGDRPQYLGVPGDRQYCLT 7748 Score = 55.5 bits (132), Expect(2) = 4e-15, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 28/40 (70%) Frame = +2 Query: 598 LEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGF 637 L++YH+ +WPLEWT+ R N+CY K+IC+ DH R F Sbjct: 10478 LQVYHSYYWPLEWTLPARNKNSCYVKVICHIPDHVRTTFF 10597 Score = 49.7 bits (117), Expect(2) = 4e-15, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 27/38 (71%) Frame = +1 Query: 563 KCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 600 +CDY NVPT V TP+EY CGLSEEKA + + +E+ Sbjct: 10285 QCDYTNVPTVVLTPVEYAACGLSEEKANLTFGEATIEV 10398 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 28/51 (54%), Positives = 38/51 (74%) Frame = +1 Query: 632 DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLE 682 + V+G H++GPNAG++ QGF AAMKCGLTK+ LD T+G+HP +V T Sbjct: 12328 ELVVGLHVMGPNAGDILQGFVAAMKCGLTKRQLDATVGLHPGSAQVSTAFS 12480 Score = 48.1 bits (113), Expect(2) = 1e-07, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 33/48 (68%) Frame = +2 Query: 511 KSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFG 558 SG+I VN+ +QT+V ++YA+G + +P T +++ +G LLA RL+ Sbjct: 9908 SSGRILVNERDQTSVDHIYAIGSVQHGRPTTTGLSVHAGTLLAHRLYA 10051 Score = 32.0 bits (71), Expect(2) = 1e-07, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 21/26 (80%) Frame = +1 Query: 486 VLLAIGRDSCTRKIGLEKIGVKINEK 511 VLL++GR +CT IGL+ +GV+ +++ Sbjct: 9739 VLLSVGRKACTSNIGLQCVGVQCSQE 9816 >BADN01025333.1 Thunnus orientalis DNA, contig: superscaffoldBa00000523_0005, whole genome shotgun sequence Length = 4849 Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 38/46 (82%), Positives = 39/46 (84%) Frame = -2 Query: 632 DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 677 DRVIGFH LGPNAGEVTQGF AMKCG TK+ LD TIGIHPTC EV Sbjct: 2421 DRVIGFHYLGPNAGEVTQGFGTAMKCGATKEQLDGTIGIHPTCAEV 2284 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/38 (76%), Positives = 36/38 (94%) Frame = -1 Query: 563 KCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 600 +CDYINVPTTVFTPLEYG CGLSE++AIE+Y +EN+E+ Sbjct: 3643 QCDYINVPTTVFTPLEYGSCGLSEDRAIELYGQENVEV 3530 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 23/36 (63%), Positives = 32/36 (88%) Frame = -3 Query: 598 LEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDR 633 +++YH+LFWPLE+TV GR+NN CY+K+ICNK D+ R Sbjct: 2669 VQVYHSLFWPLEFTVPGRDNNRCYSKLICNKLDNVR 2562 >BADN01034111.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0016, whole genome shotgun sequence Length = 5636 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 60/115 (52%), Gaps = 41/115 (35%) Frame = +2 Query: 230 AAILGKKVMVLDFVVPSPQG---------------------------------------- 249 AA LG+KV VLD+V PS +G Sbjct: 1862 AAQLGQKVAVLDYVEPSVKGKIHFLCCQLQNYKNKFPLNITWN*DSKTPS*SM*EILFQT 2041 Query: 250 -TSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKA 303 T WG+GGTCVNVGCIPKKLMHQAALLG A+ D++K+GW+ + + H+W TK+ Sbjct: 2042 GTKWGIGGTCVNVGCIPKKLMHQAALLGAAVKDAKKYGWQISGPICHDW*V*TKS 2206 >BADN01035419.1 Thunnus orientalis DNA, contig: superscaffoldBa00000857_0017, whole genome shotgun sequence Length = 21348 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 41/59 (69%) Frame = -1 Query: 117 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTV 175 ++ ++ VVIFSK+ CP+ K +F+ +G V+ELD+ +DG R+QE L+++T +TV Sbjct: 19134 MVSQNCVVIFSKTTCPYCKMAKNVFNEIGATYKVIELDEHNDGRRLQEALAQMTGARTV 18958 >BADN01034113.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0018, whole genome shotgun sequence Length = 8232 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/32 (84%), Positives = 27/32 (84%) Frame = +3 Query: 398 SYVALECAGFLAGFGLDVTVMVRSILLRGFDQ 429 S VALECAGFL G GLD TVMVRSI LRGFDQ Sbjct: 2886 SDVALECAGFLTGIGLDTTVMVRSIALRGFDQ 2981 >BADN01055795.1 Thunnus orientalis DNA, contig: superscaffoldBa00001778_0013, whole genome shotgun sequence Length = 5933 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 30/49 (61%) Frame = +1 Query: 633 RVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 681 +V+G H+ G E+ QGFA A+K G TK D TI IHPT E F T+ Sbjct: 4036 QVVGLHMQGLGCDEMLQGFAVAIKMGATKSDFDKTIAIHPTSSEEFVTM 4182 >BADN01034114.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0019, whole genome shotgun sequence Length = 6831 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 35/49 (71%) Frame = +3 Query: 488 LAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILE 536 LA GR T+ +GL+K+GV++N ++GKI V E T+VP +YA GDI E Sbjct: 2715 LASGRAPETKALGLDKLGVQLNNETGKIVVAADESTSVPNIYAFGDIGE 2861 >BADN01024054.1 Thunnus orientalis DNA, contig: superscaffoldBa00000486_0035, whole genome shotgun sequence Length = 4245 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = +1 Query: 122 RVVIFSKSYCPHSTRVKELFSSLGVE-CNVLELDQVDDGARVQEVLSEITNQKTVPNIFV 180 RV ++S CPH + K LGV C+V + ARV+E +T + TVP IF Sbjct: 3382 RVTVYSIQGCPHCMQAKATLGHLGVPVCDVDIGRHPELRARVKE----LTGRSTVPQIFF 3549 Query: 181 NKVHVGGCDQTFQAYQSGLLQKLLQE 206 N +HVGG D LQKL++ Sbjct: 3550 NSIHVGGNDD---------LQKLVRR 3600 >BADN01034115.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0020, whole genome shotgun sequence Length = 4980 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 26/43 (60%) Frame = +3 Query: 656 KCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCXG 698 +CG T L T+GIHPTC E + ITK SGLD T GC G Sbjct: 3339 RCGATYSHLLKTVGIHPTCAEELIKINITKRSGLDPTVTGC*G 3467 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 25/30 (83%) Frame = +2 Query: 570 PTTVFTPLEYGCCGLSEEKAIEVYKKENLE 599 PTTVFTPLEYGC GLSEE+A + + K+ +E Sbjct: 53 PTTVFTPLEYGCVGLSEEEAEKKHGKDGIE 142 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.319 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 504,525,143 Number of extensions: 7164927 Number of successful extensions: 27598 Number of sequences better than 1.0e-02: 10 Number of HSP's gapped: 27590 Number of HSP's successfully gapped: 26 Length of query: 698 Length of database: 228,165,821 Length adjustment: 128 Effective length of query: 570 Effective length of database: 211,133,885 Effective search space: 120346314450 Effective search space used: 120346314450 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 45 (21.9 bits)