genewise output Score 302.20 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000141_2.0 210 YDYDLIIIGGGSGGLSCAK EAAILGK YDYDL++IGGGSGGL+ AK EAA L K YDYDLLVIGGGSGGLAVAK EAAALRK BADN01057254.1 3879 tgtgccgagggtggcgggaGTCAGCA Intron 1 TAGggggcaa aaaattttgggcggtctca<0-----[3936 : 6326]-0>accctga tcccggttaataaggtgag atgggga SPP00000141_2.0 236 KVMVLDFVVPSPQGTSW LGGTCV KV++LD+ PS +GT LGG+ + KVLILDLEAPSLRGTKR G:E[gaa] LGGSSL BADN01057254.1 6348 agcacgcggctcagaaaGGTGAGTG Intron 2 CAGAAcggtac attttataccctggcag <1-----[6400 : 6641]-1> tggcgt gggctctgtataaccgg gatctc SPP00000141_2.0 260 NVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ N+ I K + QA+LLG+A+ DS+K+GW + ++ NLNSI-RKFLQQASLLGKAIQDSQKYGWRFKEE BADN01057254.1 6662 ataaa aatcccgtccgagacgtcatgtatagg atagt gattaaccttgactaacaaagggtaaa cgctc ggttagaaagaattactgatcggcagg SPP00000141_2.0 293 RHNWETMTKAIQNHISSLNWGYR H+W + +A+Q + S + + V:V[gtg] CHSWSELVEAVQEQVKSRSLELK BADN01057254.1 6758 GGTGATTT Intron 3 CAGTGtcatagcggggcgcgatcatgca <1-----[6759 : 6934]-1> gagggattactaaatacggtata cccgtagggtggggggtctaggg SPP00000141_2.0 317 LSLREKAVAYVNSYGEFVEHHKIK AT L V Y+N+ GE+V H ++ T RELESCGVFYLNAGGEIVAPHTVQ VT BADN01057254.1 7006 agcgatggttcaggggaggccagcGTACATG Intron 4 CAGga gatagggttatacggattccacta<0-----[7078 : 7634]-0>tc agggctactcctttagaggccagg ga SPP00000141_2.0 343 NKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT + G++ TA +VIATG+RP+YLG+ GD++YC+T DMNGRKRRLTAETLVIATGDRPQYLGVPGDRQYCLT BADN01057254.1 7641 gaagaaaccaggacgagaggacctcggcggacttca ataggaggtccactttccgagcaatgtcgagaagtc cgtggggtgaagcccctaacatgtgcatacagccac SPP00000141_2.0 379 DDLFSLPYCPGKTLVVGASYVAL +DL+SLP+ PG+TLV+G S L S:S[agt] EDLLSLPHSPGRTLVLGGSAEGL BADN01057254.1 7749 AGGTCGACT Intron 5 CAGTggcctccctcgcacgcggtgggt <2-----[7751 : 7842]-2> aattctcaccggctttggccagt gtggcgtctatgcggacgtaggg SPP00000141_2.0 403 ECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFI ECAGFL+G+GL VTVM++ LL GFDQ+MA+K+ ++M GV+FL + ECAGFLSGLGLPVTVMLQPDLLPGFDQKMAQKIENHMLVAGVEFL--YH BADN01057254.1 7913 gtggtctgcgccgagacccgcccgtgcaagcaagacacgggggtc tc agcgttcgtgtctctttacattcgtaaatcaataaatttcgtatt aa gctccgtccaggcccggaacccggttgagaggaaccgattagact tc SPP00000141_2.0 452 PVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNT + + L G + ++TE + ++ CSLAKVLICIKTGIMSFPLENTEILNVL-CLFVC BADN01057254.1 8054 ttcgagcataaagaattctgaagatagt tctgt gctcatttgtacgttctctaacattatt gtttg taccgagatagaacgattaactacatta tctgt SPP00000141_2.0 486 VLLAIGRDSCTRKIGLEKIGVKINE VLL++GR +CT IGL+ +GV+ ++ VLLSVGRKACTSNIGLQCVGVQCSQ BADN01057254.1 8153 GTAAGGT Intron 6 AAGgcctggaagtaaaagcctgggctac <0-----[8153 : 9738]-0>tttctggacgcgatgtagtgtagga tgcttgggcccccccggttgggccg SPP00000141_2.0 511 SGKIPVNDVEQTNVPYVYAVGDI SG+I VN+ +QT+V ++YA+G + K:D[gac] SGRILVNERDQTSVDHIYAIGSV BADN01057254.1 9814 GAGTATGTT Intron 7 CAGCagaacgagagcaaggcatgagtg <2-----[9816 : 9909]-2> gggtttaagaacgtaatactgct tcgcggtggtgctattttctagg SPP00000141_2.0 535 LEDKPELTPVAIQSGKLLAQRLFGASLEK +P T +++ +G LLA RL+ QHGRPTTTGLSVHAGTLLAHRLYAGDNIL BADN01057254.1 9980 ccgccaaagctgcggaccgccctgggaatGTACACA Intron 8 aaggccccgtctacgcttcagtacgaatt<0-----[10067:10287] gttacccaccagttggggctcctaacccg SPP00000141_2.0 564 CDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLE CDY NVPT V+TP+EY CGLSEEKA + + +E CDYTNVPTVVLTPVEYAACGLSEEKANLTFGEATIE BADN01057254.1 10285 CAGtgtaagcaggcacggtggtgctggagacatgggaag -0>gaacatcctttcctaaccggtcaaacatctgaccta ttcctgcttgcggaattcttgtggactaataactag SPP00000141_2.0 600 IYHTLFWPLEWTVAGRENNTCYAKII +YH+ +WPLEWT+ R N+CY K+I VYHSYYWPLEWTLPARNKNSCYVKVI BADN01057254.1 10396 GTTCTCA Intron 9 CAGgtcatttccgtaccgaaaatttgaga <0-----[10396:10483]-0>taagaagctagctccgaaacgatatt gtccccgagggtttcgtacccttacc SPP00000141_2.0 626 CNKFDH DRVIGFHILGPNAGEVTQGF C+ DH + V+G+H++GPNAG++ QGF CHIPDH ELVVGLHVMGPNAGDILQGF BADN01057254.1 10562 tcacgcGTACGCA Intron 10 CAGgcgggccgagcagggaccgt gatcaa<0-----[10580:12327]-0>atttgtattgcacgattagt tcctct gtgttctcgccttatctact SPP00000141_2.0 652 AAAMKCGLTKQLLDDTIGIHPTCGEVFT AAMKCGLTK+ LD T+G+HP +V T VAAMKCGLTKRQLDATVGLHPGSAQVST BADN01057254.1 12388 gggaatgcaacccggaggcccgtgcgaa tcctaggtcagatacctgtacgccatgc taagatttcaaggcctgccccgacgccc // Making a E in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a D in phase 2 intron >BADN01057254.1.pep YDYDLLVIGGGSGGLAVAKEAAALRKKVLILDLEAPSLRGTKRELGGSSLNLNSIRKFLQ QASLLGKAIQDSQKYGWRFKEEVCHSWSELVEAVQEQVKSRSLELKRELESCGVFYLNAG GEIVAPHTVQVTDMNGRKRRLTAETLVIATGDRPQYLGVPGDRQYCLTSEDLLSLPHSPG RTLVLGGSAEGLECAGFLSGLGLPVTVMLQPDLLPGFDQKMAQKIENHMLVAGVEFLYHC SLAKVLICIKTGIMSFPLENTEILNVLCLFVCVLLSVGRKACTSNIGLQCVGVQCSQDSG RILVNERDQTSVDHIYAIGSVQHGRPTTTGLSVHAGTLLAHRLYAGDNILCDYTNVPTVV LTPVEYAACGLSEEKANLTFGEATIEVYHSYYWPLEWTLPARNKNSCYVKVICHIPDHEL VVGLHVMGPNAGDILQGFVAAMKCGLTKRQLDATVGLHPGSAQVST // >BADN01057254.1.[3879:12471].sp TATGACTACGACCTGCTGGTTATTGGAGGAGGTTCAGGAGGGCTGGCTGTGGCAAAGGAA GCTGCGGCGCTGAGGAAAAAGGTGCTGATCCTTGACCTTGAGGCTCCATCTCTAAGAGGC ACCAAGAGGGAACTGGGAGGTTCCAGTCTCAACTTGAACAGTATCAGGAAGTTTCTTCAA CAGGCATCACTACTGGGAAAAGCTATTCAAGACTCTCAGAAATATGGCTGGAGGTTCAAA GAGGAGGTGTGCCACAGCTGGAGTGAACTGGTGGAGGCTGTGCAGGAGCAGGTGAAGTCT CGCAGTTTAGAGCTGAAGAGAGAGCTGGAGAGCTGTGGAGTCTTTTACCTCAATGCTGGT GGAGAGATAGTGGCGCCCCACACAGTGCAGGTGACAGACATGAATGGGAGGAAGAGGCGT CTGACAGCAGAGACCCTCGTCATCGCTACAGGAGACAGACCTCAGTATCTGGGCGTACCT GGAGACAGACAGTACTGCCTAACCAGTGAGGATCTGCTGTCCCTGCCTCACTCTCCAGGT CGGACCCTGGTGCTAGGCGGGTCTGCAGAGGGGTTGGAGTGCGCTGGCTTCCTGTCTGGC CTCGGACTGCCGGTCACCGTCATGCTGCAACCAGACCTCCTCCCGGGGTTTGATCAGAAA ATGGCACAGAAGATAGAAAACCACATGCTAGTTGCTGGAGTGGAATTCCTTTATCACTGT TCACTCGCCAAGGTACTGATATGTATAAAGACAGGAATCATGTCATTTCCTTTAGAAAAC ACTGAAATCTTAAATGTTTTATGTCTCTTTGTGTGTGTTCTGCTCTCTGTTGGGAGGAAG GCCTGCACCAGCAACATCGGCCTGCAGTGTGTTGGGGTGCAGTGCAGCCAGGACAGTGGC AGGATCCTGGTGAATGAGAGGGATCAGACCAGTGTAGATCATATTTATGCCATTGGATCG GTGCAGCATGGTCGACCCACCACCACAGGCCTCTCAGTGCATGCTGGGACGCTGCTGGCC CATCGCCTCTATGCAGGAGACAACATCTTGTGTGATTACACCAATGTGCCCACTGTTGTG CTCACGCCGGTAGAATATGCTGCCTGTGGTCTGTCTGAGGAGAAAGCCAATCTAACATTT GGAGAAGCCACTATAGAGGTGTATCACAGCTACTACTGGCCACTGGAGTGGACTCTTCCT GCCAGGAATAAAAACTCCTGCTATGTTAAAGTCATCTGTCACATCCCTGACCATGAGCTT GTGGTTGGTCTCCATGTCATGGGCCCCAATGCTGGAGATATCCTTCAAGGCTTTGTTGCA GCAATGAAATGTGGTCTTACCAAACGACAGCTGGACGCCACTGTGGGCCTCCACCCCGGG TCAGCCCAGGTCAGCACC // BADN01057254.1 GeneWise match 3879 12471 303.20 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 3879 3935 0.00 + 0 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 3936 6326 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 6327 6399 0.00 + 0 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 6400 6641 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 6642 6758 0.00 + 2 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 6759 6934 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 6935 7077 0.00 + 2 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 7078 7634 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 7635 7750 0.00 + 0 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 7751 7842 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 7843 8152 0.00 + 1 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 8153 9738 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 9739 9815 0.00 + 0 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 9816 9909 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 9910 10066 0.00 + 1 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 10067 10287 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 10288 10395 0.00 + 0 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 10396 10483 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 10484 10579 0.00 + 0 BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise intron 10580 12327 0.00 + . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 12328 12471 0.00 + 0 BADN01057254.1-genewise-prediction-1 // genewise output Score 18.36 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000141_2.0 19 VASEGSVRRPSGPVPAPQPPAF +ASE S+ P +P P P F IASEWSIMCPPCQIPLPPVPRF BADN01057254.1-17534 agtgtaaatcctcactccgcct tccaggttgccgatctcctcgt caaggtcgcatcacaagtgatc // >BADN01057254.1.pep IASEWSIMCPPCQIPLPPVPRF // >BADN01057254.1.[17534:17467].sp ATCGCATCAGAGTGGAGTATCATGTGCCCACCTTGCCAAATCCCATTACCGCCTGTGCCA CGTTTC // BADN01057254.1 GeneWise match 17534 17469 18.36 - . BADN01057254.1-genewise-prediction-1 BADN01057254.1 GeneWise cds 17534 17469 0.00 - 0 BADN01057254.1-genewise-prediction-1 //