TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000137_2.0 # Protein # Thioredoxin reductase 2 (TR2) # Human (Homo sapiens) (494 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01025334.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 108 2e-26 BADN01034113.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 72 2e-23 BADN01034111.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 96 3e-19 BADN01057254.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 77 8e-15 BADN01034115.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 72 1e-11 BADN01025333.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 65 9e-10 BADN01034114.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 53 8e-06 BADN01055795.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 53 9e-06 BADN01055794.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 34 6e-04 >BADN01025334.1 Thunnus orientalis DNA, contig: superscaffoldBa00000523_0006, whole genome shotgun sequence Length = 11646 Score = 102 bits (254), Expect(2) = 2e-26, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 66/139 (47%), Gaps = 48/139 (34%) Frame = -1 Query: 47 GTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWE-------------------- 86 G R GLGGTCVNVGCIPKKLMHQ ALLG +QDA +GWE Sbjct: 4551 GWRSGLGGTCVNVGCIPKKLMHQTALLGTALQDARKFGWEFDETGEGSEQRPRRSRRGDI 4372 Query: 87 ----------------------------VAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQ 118 V PV H+W M AV N++ SLNWG+RV L+ Sbjct: 4371 APACRGKSEASLFRNHLLSFH*FH*WVSVCPPVKHNWETMKTAVNNYIGSLNWGYRVALR 4192 Query: 119 DRKVKYFNIKASFVDEHTV 137 D+ V Y N A F++ H + Sbjct: 4191 DKNVNYVNAYAEFIEPHKI 4135 Score = 40.4 bits (93), Expect(2) = 2e-26, Method: Compositional matrix adjust. Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -2 Query: 27 EAAQLGRKVAVVDYVEPSPQGTRWG 51 EAA LG+KV V+D+V P+P+GT WG Sbjct: 4739 EAAMLGKKVMVLDFVVPTPKGTSWG 4665 Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 54/92 (58%), Positives = 63/92 (68%) Frame = -1 Query: 163 RYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIP 222 RY AL TSDD+F L PGKTLV+GASYVALEC GFL G+GLD T+M+RSI Sbjct: 3234 RYSFMFNPALS---TSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSIL 3064 Query: 223 LRGFDQQMSSMVIEHMASHGTRFLRGCAPSRV 254 LRGFDQ M++ EHM HG +FLR P +V Sbjct: 3063 LRGFDQDMANRAGEHMEEHGVKFLRKFIPVKV 2968 Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/48 (64%), Positives = 40/48 (83%) Frame = -1 Query: 310 KILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSS 357 KI V+ E T+VPHIYAIGD++EG+ ELTP+AI AGRLL +RL+ GS+ Sbjct: 984 KIPVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGRLLARRLYAGST 841 >BADN01034113.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0018, whole genome shotgun sequence Length = 8232 Score = 72.4 bits (176), Expect(2) = 2e-23, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 41/63 (65%) Frame = +1 Query: 226 FDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWA 285 F QQM+ +V ++M ++GT+F C P RV +L G QVTW D TG E T+DTVLWA Sbjct: 3064 FVQQMAGLVTDYMEAYGTKFAWKCVPKRVDKLSSGAFQVTWTDIQTGNEHKDTYDTVLWA 3243 Query: 286 IGR 288 +G Sbjct: 3244 VGE 3252 Score = 60.5 bits (145), Expect(2) = 2e-23, Method: Compositional matrix adjust. Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = +3 Query: 197 SYVALECAGFLTGIGLDTTIMMRSIPLRGFDQ 228 S VALECAGFLTGIGLDTT+M+RSI LRGFDQ Sbjct: 2886 SDVALECAGFLTGIGLDTTVMVRSIALRGFDQ 2981 >BADN01034111.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0016, whole genome shotgun sequence Length = 5636 Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 50/109 (45%), Positives = 61/109 (55%), Gaps = 41/109 (37%) Frame = +2 Query: 28 AAQLGRKVAVVDYVEPSPQG---------------------------------------- 47 AAQLG+KVAV+DYVEPS +G Sbjct: 1862 AAQLGQKVAVLDYVEPSVKGKIHFLCCQLQNYKNKFPLNITWN*DSKTPS*SM*EILFQT 2041 Query: 48 -TRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDW 95 T+WG+GGTCVNVGCIPKKLMHQAALLG ++DA YGW+++ P+ HDW Sbjct: 2042 GTKWGIGGTCVNVGCIPKKLMHQAALLGAAVKDAKKYGWQISGPICHDW 2188 Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/23 (91%), Positives = 23/23 (100%) Frame = +1 Query: 98 MAEAVQNHVKSLNWGHRVQLQDR 120 MAEAVQNHV+SLNWGHRVQLQD+ Sbjct: 3058 MAEAVQNHVRSLNWGHRVQLQDK 3126 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = +3 Query: 120 RKVKYFNIKASFVDEHTVCGVAKGGKEI 147 RKVKY NIK S +DEHTV G+ K GKE+ Sbjct: 4671 RKVKYLNIKGSLLDEHTVKGLTKAGKEV 4754 >BADN01057254.1 Thunnus orientalis DNA, contig: superscaffoldBa00001857_0006, whole genome shotgun sequence Length = 19607 Score = 76.6 bits (187), Expect(2) = 8e-15, Method: Compositional matrix adjust. Identities = 36/78 (46%), Positives = 52/78 (66%) Frame = +2 Query: 177 TSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIE 236 +S+D+ L SPG+TLV+G S LECAGFL+G+GL T+M++ L GFDQ+M+ + Sbjct: 7838 SSEDLLSLPHSPGRTLVLGGSAEGLECAGFLSGLGLPVTVMLQPDLLPGFDQKMAQKIEN 8017 Query: 237 HMASHGTRFLRGCAPSRV 254 HM G FL C+ ++V Sbjct: 8018 HMLVAGVEFLYHCSLAKV 8071 Score = 26.6 bits (57), Expect(2) = 8e-15, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +3 Query: 144 GKEILLSADHIIIATGGRPRYPTHIEGALEYGIT 177 G++ L+A+ ++IATG RP+Y + G +Y +T Sbjct: 7650 GRKRRLTAETLVIATGDRPQY-LGVPGDRQYCLT 7748 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%) Frame = +2 Query: 310 KILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTV 369 +ILV+ R+ TSV HIYAIG V GRP T +++ AG LL RL+ G + L+ + T Sbjct: 9917 RILVNERDQTSVDHIYAIGSVQHGRPTTTGLSVHAGTLLAHRLYAGDNILVHSLEIICTY 10096 Query: 370 F 370 + Sbjct: 10097Y 10099 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 31/41 (75%) Frame = +1 Query: 428 QLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHP 468 +LV+GLH +GPNAG++ QGF +KCG + Q+ TVG+HP Sbjct: 12328 ELVVGLHVMGPNAGDILQGFVAAMKCGLTKRQLDATVGLHP 12450 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = +1 Query: 361 DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYH---AHYKPLEF 406 DY NVPT V TP+EY GLSEE+A G+ +EV A+ K EF Sbjct: 10291 DYTNVPTVVLTPVEYAACGLSEEKANLTFGEATIEVLTHKPAYLKRKEF 10437 >BADN01034115.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0020, whole genome shotgun sequence Length = 4980 Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/43 (67%), Positives = 40/43 (93%) Frame = +3 Query: 452 KCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCXG 494 +CGA+Y+ +++TVGIHPTC+EE++K+ I+KRSGLDPTVTGC G Sbjct: 3339 RCGATYSHLLKTVGIHPTCAEELIKINITKRSGLDPTVTGC*G 3467 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/30 (76%), Positives = 27/30 (90%) Frame = +2 Query: 366 PTTVFTPLEYGCVGLSEEEAVARHGQEHVE 395 PTTVFTPLEYGCVGLSEEEA +HG++ +E Sbjct: 53 PTTVFTPLEYGCVGLSEEEAEKKHGKDGIE 142 Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/27 (81%), Positives = 25/27 (92%) Frame = +2 Query: 394 VEVYHAHYKPLEFTVAGRDASQCYVKM 420 V+VYHA YKPLEFTVA RDASQCY+K+ Sbjct: 1850 VQVYHAFYKPLEFTVAERDASQCYIKV 1930 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 41/75 (54%) Frame = +2 Query: 378 VGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLG 437 VGL+ A A+ + V Y A + AG + + ++C R Q +LGLHF G Sbjct: 2228 VGLTNIPATAKSRKTSVG-YRATTNTSLASAAGYKSDFLPL*VICERSGDQKILGLHFTG 2404 Query: 438 PNAGEVTQGFALGIK 452 PNAGEVTQGFA+ + Sbjct: 2405 PNAGEVTQGFAMSFQ 2449 >BADN01025333.1 Thunnus orientalis DNA, contig: superscaffoldBa00000523_0005, whole genome shotgun sequence Length = 4849 Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Frame = -2 Query: 430 VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 472 V+G H+LGPNAGEVTQGF +KCGA+ Q+ T+GIHPTC+E Sbjct: 2415 VIGFHYLGPNAGEVTQGFGTAMKCGATKEQLDGTIGIHPTCAE 2287 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/40 (67%), Positives = 32/40 (80%) Frame = -1 Query: 361 DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAH 400 DY NVPTTVFTPLEYG GLSE+ A+ +GQE+VEV +H Sbjct: 3637 DYINVPTTVFTPLEYGSCGLSEDRAIELYGQENVEVSLSH 3518 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 17/30 (56%), Positives = 25/30 (83%) Frame = -3 Query: 393 HVEVYHAHYKPLEFTVAGRDASQCYVKMVC 422 +V+VYH+ + PLEFTV GRD ++CY K++C Sbjct: 2672 YVQVYHSLFWPLEFTVPGRDNNRCYSKLIC 2583 >BADN01034114.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0019, whole genome shotgun sequence Length = 6831 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 36/49 (73%) Frame = +3 Query: 284 WAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE 332 A GR P+T++L L+K GV + +T KI+V + E+TSVP+IYA GD+ E Sbjct: 2715 LASGRAPETKALGLDKLGVQLNNETGKIVVAADESTSVPNIYAFGDIGE 2861 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/33 (69%), Positives = 27/33 (81%) Frame = +1 Query: 333 GRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNV 365 GRPELTP AI AG+LL +RL G S +LM+YDNV Sbjct: 5704 GRPELTPTAIKAGKLLARRLTGQSIELMNYDNV 5802 >BADN01055795.1 Thunnus orientalis DNA, contig: superscaffoldBa00001778_0013, whole genome shotgun sequence Length = 5933 Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 36/56 (64%) Frame = +1 Query: 427 PQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLRISKR 482 PQ+V GLH G E+ QGFA+ IK GA+ + +T+ IHPT SEE V +R KR Sbjct: 4033 PQVV-GLHMQGLGCDEMLQGFAVAIKMGATKSDFDKTIAIHPTSSEEFVTMR*CKR 4197 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +3 Query: 340 IAIMAGRLLVQRLFGGSSD-LMDYDNVPTTVFTPLEYGCVGLSEEE 384 +AI AGR L RLF G D +DY ++PT VF+ G VGL+E E Sbjct: 2307 VAIAAGRKLAHRLFEGKKDSKLDYSSIPTVVFSHPPIGTVGLTEGE 2444 >BADN01055794.1 Thunnus orientalis DNA, contig: superscaffoldBa00001778_0012, whole genome shotgun sequence Length = 1448 Score = 33.9 bits (76), Expect(2) = 6e-04, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +3 Query: 223 LRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTW----EDSTTGKEDTGT 278 LR FD +S+ + + + G + V + G L+VT + +E T Sbjct: 249 LRNFDSFVSTNCTKELQNSGVDLWKNSQVKSVSKTDRG-LEVTLVTKDPEKKNEEEKIST 425 Query: 279 F---DTVLWAIGRVPDTRSLNL 297 D +LWAIGR P+T LN+ Sbjct: 426 IQEVDCLLWAIGRRPNTSGLNI 491 Score = 32.7 bits (73), Expect(2) = 6e-04, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 26/35 (74%) Frame = +1 Query: 190 KTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLR 224 ++++VGA Y+A+E AG L+ +G T++++R +R Sbjct: 22 RSVIVGAGYIAVEMAGILSTLGSKTSLVIRQAGVR 126 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.319 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 374,808,256 Number of extensions: 5425174 Number of successful extensions: 17313 Number of sequences better than 1.0e-02: 9 Number of HSP's gapped: 17311 Number of HSP's successfully gapped: 30 Length of query: 494 Length of database: 228,165,821 Length adjustment: 125 Effective length of query: 369 Effective length of database: 211,533,071 Effective search space: 78055703199 Effective search space used: 78055703199 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 44 (21.6 bits)