genewise output Score 192.63 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000137_2.0 365 VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE VPTTVFTPLEYGCVGLSEEEA +HG++ +E VPTTVFTPLEYGCVGLSEEEAEKKHGKDGIE BADN01034115.1 50 gcaagtaccgtgtggctgggggaacgaggag tcccttcctaaggtgtcaaacaaaagaagta gcctgcctcgcctgtatgggtgggcaaccag SPP00000137_2.0 396 VYHAHYKPLEFTVAGRDASQCYVK VYHA YKPLEFTVA RDASQCY+K VYHAFYKPLEFTVAERDASQCYIK BADN01034115.1 143 GTATGAT Intron 1 CAGgtcgttaccgtagggcggacttaa <0-----[143 : 1855]-0>taactaactatctcagacgagata cctaccgcgacttagctccgtctg SPP00000137_2.0 420 MVCLREPPQLVLGLHFLGPNAGEVTQ ++C R Q +LGLHF GPNAGEVTQ VICERSGDQKILGLHFTGPNAGEVTQ BADN01034115.1 1928 GTAGGGT Intron 2 TAGgatgcaggcaacgcctagcaggggac <0-----[1928 : 2350]-0>ttgagggaaattgtatcgcacgatca atcaatacgacgtgccttattaacag SPP00000137_2.0 446 GFALGI CGASYAQVMRTVGIHPT GFA+ + CGA+Y+ +++TVGIHPT GFAMSF K:Q[cag] CGATYSHLLKTVGIHPT BADN01034115.1 2429 gtgaatCAGTAAGTT Intron 3 CAGGtggattcccaaggacca gtctgt <2-----[2449 : 3340]-2> ggccacattactgtacc cttgcc tgaatccgggaacccac SPP00000137_2.0 470 CSEEVVKLRISKRSGLDPTVTGC C+EE++K+ I+KRSGLDPTVTGC CAEELIKINITKRSGLDPTVTGC BADN01034115.1 3393 tgggcaaaaaaactgtgcagagt gcaattatatcagcgtacctcgg ttgggcgccctacccgccactcc // Making a Q in phase 2 intron >BADN01034115.1.pep VPTTVFTPLEYGCVGLSEEEAEKKHGKDGIEVYHAFYKPLEFTVAERDASQCYIKVICER SGDQKILGLHFTGPNAGEVTQGFAMSFQCGATYSHLLKTVGIHPTCAEELIKINITKRSG LDPTVTGC // >BADN01034115.1.[50:3461].sp GTGCCCACCACTGTGTTCACCCCTCTCGAGTACGGCTGTGTGGGTCTATCTGAGGAGGAG GCTGAGAAGAAGCACGGAAAAGACGGCATAGAGGTCTACCATGCATTCTACAAGCCCCTG GAATTCACTGTTGCAGAGCGCGATGCCAGCCAGTGTTACATTAAGGTAATTTGCGAACGA AGTGGAGACCAGAAAATCCTGGGTCTGCACTTCACTGGTCCAAATGCTGGAGAAGTCACA CAGGGCTTTGCTATGAGCTTCCAGTGTGGGGCAACATATTCCCACCTGCTGAAGACAGTA GGCATCCACCCAACCTGTGCTGAGGAGCTGATCAAGATCAACATCACTAAACGCTCCGGC TTGGACCCCACAGTCACTGGCTGC // BADN01034115.1 GeneWise match 50 3461 192.63 + . BADN01034115.1-genewise-prediction-1 BADN01034115.1 GeneWise cds 50 142 0.00 + 0 BADN01034115.1-genewise-prediction-1 BADN01034115.1 GeneWise intron 143 1855 0.00 + . BADN01034115.1-genewise-prediction-1 BADN01034115.1 GeneWise cds 1856 1927 0.00 + 0 BADN01034115.1-genewise-prediction-1 BADN01034115.1 GeneWise intron 1928 2350 0.00 + . BADN01034115.1-genewise-prediction-1 BADN01034115.1 GeneWise cds 2351 2448 0.00 + 0 BADN01034115.1-genewise-prediction-1 BADN01034115.1 GeneWise intron 2449 3340 0.00 + . BADN01034115.1-genewise-prediction-1 BADN01034115.1 GeneWise cds 3341 3461 0.00 + 1 BADN01034115.1-genewise-prediction-1 // genewise output Score 15.21 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000137_2.0 60 GCIPKKLMH GC+ K LMH GCFHKALMH BADN01034115.1 -2542 gttcagtac ggtaactta ttctgaagc // >BADN01034115.1.pep GCFHKALMH // >BADN01034115.1.[2542:2514].sp GGTTGTTTCCATAAGGCATTAATGCAC // BADN01034115.1 GeneWise match 2542 2516 15.21 - . BADN01034115.1-genewise-prediction-1 BADN01034115.1 GeneWise cds 2542 2516 0.00 - 0 BADN01034115.1-genewise-prediction-1 //