genewise output
Score 214.64 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000109_2.0   34 TDVFLSKPQKAALEYLEDIDLKTLEK                        
                     TD+FL+ P KA L++LE+ +LKTL+                         
                     TDIFLTPPLKATLKHLEETELKTLKG          E:E[gaa]      
BADN01076486.1  2087 agattacccagacactggagcaatagGGTAAGTC  Intron 1      
                     catttccctacctaataacatactag <1-----[2166 : 2356]   
                     ttatgaaggaatcatagatgcatgaa                        


SPP00000109_2.0   60      PRTFKAKELWEKNGAVIMAVRRPGCFLCRE               
                           +T+K + LWEK+GAVIMAVRRPG FLCRE               
                          IKTLKGRTLWEKSGAVIMAVRRPGXFLCRE               
BADN01076486.1  2354 CAGAAaaatagaactgatgggaaggcccgttttag               
                     -1>  tactaggctgaacgctttctggcggttgga               
                          agtgacgtggggtatccgatggtaatgcag               


SPP00000109_2.0   91                        EAADLSSLKSMLDQLGVPLYAVVKEH 
                                            EAA+LSSLK +LD+LGVPLYAVVKE  
                                            EAAELSSLKPQLDELGVPLYAVVKED 
BADN01076486.1  2449 GTAATGA  Intron 2   CAGggggcttcacccggcggcctgggagg 
                     <0-----[2449 : 3340]-0>accatcctacataatgtctacttaaa 
                                            gtaggctgacggtgcgctgttggggc 


SPP00000109_2.0  117 IRTEVKDFQPYFKGEIFLDEK                       KKFYG 
                     + TEV++F+PYFKGE+FLDEK                       ++FYG 
                     VGTEVQNFRPYFKGEVFLDEK                       RRFYG 
BADN01076486.1  3419 ggaggcatacttagggttggaGTTCACT  Intron 3   CAGacttg 
                     tgcataatgcatagatttaaa<0-----[3482 : 3668]-0>ggtag 
                     cccgcgccagccgggccgtag                       gtttg 


SPP00000109_2.0  143 PQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGK 
                     P+ RKM ++ F+R+GVW N +RA+  GF GN+ GEGF+LGGVFV+G G+ 
                     PRERKMGLLAFLRVGVWLNGLRAFKNGFMGNVLGEGFVLGGVFVIGRGQ 
BADN01076486.1  3684 ccgcaagccgtccgggttagcagtaagtagagtgggtgcgggtgagcgc 
                     cgagatgttcttgtgtgtagtgctaagttgattgagtttggttttggga 
                     ctgtggccggctttggggttggccgtccgattgagctcctgccctgaag 


SPP00000109_2.0  192 Q                       GILLEHREKEFGDKVNLLSVLEAAK 
                     Q                       GILLEHRE EFGDKVN+  V+ AA+ 
                     Q                       GILLEHREIEFGDKVNIEDVIRAAR 
BADN01076486.1  3831 cGTAAAAA  Intron 4   TAGgaccgcagagtggagaagggacgga 
                     a<0-----[3834 : 3938]-0>gtttaagatatgaatataattgccg 
                     g                       aagggcagtgtataaccattcatca 


SPP00000109_2.0  218 MIKPQTLASEKK                                      
                      I  + L  E K                                      
                     RIPQELLPLENK                                      
BADN01076486.1  4014 aaccgccccgaa                                      
                     gtcaattctaaa                                      
                     gaagatttgaca                                      


//
Making a E in phase 1 intron
>BADN01076486.1.pep
TDIFLTPPLKATLKHLEETELKTLKGEIKTLKGRTLWEKSGAVIMAVRRPGXFLCREEAA
ELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPYFKGEVFLDEKRRFYGPRERKMGLLAF
LRVGVWLNGLRAFKNGFMGNVLGEGFVLGGVFVIGRGQQGILLEHREIEFGDKVNIEDVI
RAARRIPQELLPLENK
//
>BADN01076486.1.[2087:4049].sp
ACTGATATATTTTTGACACCACCGCTGAAAGCAACTCTCAAACATTTAGAGGAAACTGAG
CTCAAAACTTTGAAAGGAGAAATAAAGACTTTGAAAGGCAGGACTCTGTGGGAGAAGTCT
GGAGCTGTCATCATGGCAGTTCGGCGGCCTGGATGATTTTTGTGCAGAGAGGAGGCTGCA
GAGCTGTCCTCTCTGAAACCCCAGCTGGATGAGCTCGGGGTCCCTCTGTATGCTGTGGTG
AAGGAGGACGTCGGCACCGAGGTCCAGAACTTCAGACCGTACTTCAAGGGGGAGGTCTTC
TTGGATGAAAAGAGGCGTTTTTATGGGCCCCGTGAGCGTAAGATGGGCCTCCTGGCGTTC
CTTCGTGTTGGGGTGTGGTTGAATGGTCTGAGGGCCTTCAAGAATGGCTTCATGGGAAAT
GTTTTGGGAGAGGGCTTTGTCCTCGGTGGGGTCTTCGTCATTGGGCGAGGACAGCAGGGA
ATACTGCTGGAGCACAGAGAGATTGAGTTTGGAGATAAAGTAAACATCGAAGATGTTATC
CGAGCTGCCAGAAGGATACCACAGGAACTTCTTCCTCTGGAAAACAAA
//
BADN01076486.1	GeneWise	match	2087	4049	214.64	+	.	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	cds	2087	2165	0.00	+	0	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	intron	2166	2356	0.00	+	.	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	cds	2357	2448	0.00	+	2	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	intron	2449	3340	0.00	+	.	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	cds	3341	3481	0.00	+	0	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	intron	3482	3668	0.00	+	.	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	cds	3669	3833	0.00	+	0	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	intron	3834	3938	0.00	+	.	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	cds	3939	4049	0.00	+	0	BADN01076486.1-genewise-prediction-1
//

genewise output
Score 15.14 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000109_2.0  153 FIRLGVWYNFFRAWN                                   
                     F +LG  + ++  WN                                   
                     FYKLGFRFTLISTWN                                   
BADN01076486.1 -3032 ttatgtatatatata                                   
                     taatgtgtcttccga                                   
                     tcgaccgtaaactgt                                   


//
>BADN01076486.1.pep
FYKLGFRFTLISTWN
//
>BADN01076486.1.[3032:2986].sp
TTTTACAAGTTAGGCTTCAGGTTTACATTAATATCCACTTGGAAT
//
BADN01076486.1	GeneWise	match	3032	2988	15.14	-	.	BADN01076486.1-genewise-prediction-1
BADN01076486.1	GeneWise	cds	3032	2988	0.00	-	0	BADN01076486.1-genewise-prediction-1
//