genewise output
Score 13.89 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000077_2.0   74 HLPGADPELVLL                                      
                     HLP +D E  L+                                      
                     HLPKSDSENALI                                      
BADN01035957.1  2445 ctcatgtgagca                                      
                     atcacacaactt                                      
                     tacgttaataaa                                      


//
>BADN01035957.1.pep
HLPKSDSENALI
//
>BADN01035957.1.[2445:2480].sp
CATTTACCCAAGTCTGATTCAGAAAATGCACTAATA
//
BADN01035957.1	GeneWise	match	2445	2480	13.89	+	.	BADN01035957.1-genewise-prediction-1
BADN01035957.1	GeneWise	cds	2445	2480	0.00	+	0	BADN01035957.1-genewise-prediction-1
//

genewise output
Score 55.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000077_2.0   55 EVKAFVTQDIPF                          HNLVMKHLPGA 
                     +VKAFV QDIP+                          HNLVMKH+PGA 
                     QVKAFVVQDIPL           Y:Y[tac]       HNLVMKHIPGA 
BADN01035957.1 -1578 cgagtggcgaccTAGTATCCT  Intron 1   CAGCcacgaacacgg 
                     atactttaatct  <2-----[1540 : 1429]-2> aatttaatcgc 
                     gcaccacgtttt                          tcggggcttac 


SPP00000077_2.0   79 DPELVLLGRRYEELERIPLSEM                            
                     DPELVLL   +EEL+  P S M                            
                     DPELVLLNHYFEELDVSPPSVM                            
BADN01035957.1 -1394 gcgcgccacttggcggacctga                            
                     acattttaaataatatgccctt                            
                     ctgtccgccctaggtattatgg                            


//
Making a Y in phase 2 intron
>BADN01035957.1.pep
QVKAFVVQDIPLYHNLVMKHIPGADPELVLLNHYFEELDVSPPSVM
//
>BADN01035957.1.[1578:1327].sp
CAGGTCAAAGCCTTCGTAGTCCAGGATATTCCTCTTTACCATAACCTGGTGATGAAGCAC
ATTCCTGGAGCCGACCCTGAGCTTGTCCTCCTGAACCACTACTTTGAAGAGCTGGATGTA
AGTCCTCCATCTGTGATG
//
BADN01035957.1	GeneWise	match	1578	1329	55.51	-	.	BADN01035957.1-genewise-prediction-1
BADN01035957.1	GeneWise	cds	1578	1541	0.00	-	0	BADN01035957.1-genewise-prediction-1
BADN01035957.1	GeneWise	intron	1540	1429	0.00	-	.	BADN01035957.1-genewise-prediction-1
BADN01035957.1	GeneWise	cds	1428	1329	0.00	-	1	BADN01035957.1-genewise-prediction-1
//