genewise output Score 158.99 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000052_2.0 11 GSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVM GS G LCVLCGLPAAGKST++R + +QGW VV+YDD++ GSAGRTPACLCVLCGLPAAGKSTLSRTVC-STAAKQGWRSTVVSYDDLI BADN01076497.1 1250 gaggcacgtctgctgccgggatactcagt aaggacgtataggttggca ggcggcccgtgttggtcccgacctcgctg gcccaagggccttcaaatt gtccgtgctgtcccggtacggcggccgcc cctagagggctgacttcgc SPP00000052_2.0 60 PD-AFLA-----GARARPA PSQWKLL P+ AF A A+ + ++WKL PEHAFHATVSGEDAKLQEM HTEWKLH BADN01076497.1 1394 cgcgtcgagtggggaccgaGTAAAGA Intron 1 TAGcagtatc caactacctcgaacataat<0-----[1451 : 2257]-0>acagata cgtgttcagagatcagaag ctagggc SPP00000052_2.0 80 RQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAA RQ +L+ +E FL + A WE I L + + S RQAVLQCIEQFLKKPEVLAMLPSSCQINSAAWERCIQALLEPET--SER BADN01076497.1 2279 acggtctagcttaacggtgaccaatcaaaggtgatacgccgcga tgc gacttagtaattaacattcttcgggatagccgaggtacttacac cag agagggttggcgggtaggggatcctgccttagaactatggggat aac SPP00000052_2.0 129 FEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK +A PL +LDDNFYY SMRYEV+QLARK SQADRA----------PLVFLLDDNFYYPSMRYEVFQLARK BADN01076497.1 2420 tcggag ccgtccggatttcaaatggtccgaa cacagc ctttttaaataacgtgaattatcga tgtcga acgtaatcccctacgatatcataag SPP00000052_2.0 170 SLGFCQLFLDCPLETCLQRNGQR SLGFCQ++L C LE+C+ RN R Y:Y[tat] SLGFCQVYLQCTLESCISRNQSR BADN01076497.1 2513 TGTAAGTT Intron 2 CAGATtcgttcgtcctatgttaaaacaa <1-----[2514 : 2998]-1> ctgtgatatagctacgtggaagg ggctcggtggctggacccacgcg SPP00000052_2.0 194 PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEAS + +P E I M ++LE PNP+KN+WE NS+ + + S+ SEPIPTEVILEMTKRLESPNPQKNSWETNSILLNTSDSVSKND BADN01076497.1 3070 tgcacaggatgaaactgtcaccaattgaaaatcaatgagtaag cactccatttatcagtaccacaaacgacagtttaccagtcaaa tgctctggagggagtagtatggacaggacctacctacttcatc SPP00000052_2.0 237 LEVTDLLLTALENPVKYAEDNME V +L+ +AL NP+ EDN E -:I[atc] QRVMELISSALSNPLSPVEDNTE BADN01076497.1 3199 ATGTAAGGC Intron 3 CAGCcagagtattgcaaccacgggaag <2-----[3201 : 3298]-2> agttattccctgactgctaaaca ggggggcctagccggcgtgccga SPP00000052_2.0 260 QK DTDRIICSTNILHKTDQTLRRIVS QK + DR C+ +++H+ DQT RR++S QK EADRQKCAASVVHQADQTCRRLIS BADN01076497.1 3369 caGTGTGTC Intron 4 CAGgggccatggaggccggcatcccat aa<0-----[3375 : 3476]-0>acagaagccgttaacaacgggttc ag atccgatcttgtcgacgctacgct SPP00000052_2.0 286 QTMKEAKG + MK A+G EAMKTARG BADN01076497.1 3549 ggaaagag actaccgg agggtcat // Making a Y in phase 1 intron Making a I in phase 2 intron >BADN01076497.1.pep GSAGRTPACLCVLCGLPAAGKSTLSRTVCSTAAKQGWRSTVVSYDDLIPEHAFHATVSGE DAKLQEMHTEWKLHRQAVLQCIEQFLKKPEVLAMLPSSCQINSAAWERCIQALLEPETSE RSQADRAPLVFLLDDNFYYPSMRYEVFQLARKYSLGFCQVYLQCTLESCISRNQSRSEPI PTEVILEMTKRLESPNPQKNSWETNSILLNTSDSVSKNDIQRVMELISSALSNPLSPVED NTEQKEADRQKCAASVVHQADQTCRRLISEAMKTARG // >BADN01076497.1.[1250:3572].sp GGGAGTGCCGGCCGGACTCCGGCCTGTCTGTGTGTCCTCTGCGGGCTGCCTGCAGCCGGG AAGTCCACGCTGTCCCGCACGGTCTGCAGCACCGCTGCAAAGCAAGGGTGGAGGTCCACT GTGGTATCCTATGATGACCTGATCCCCGAGCATGCGTTTCATGCCACAGTGTCAGGGGAA GATGCCAAACTGCAAGAAATGCACACTGAATGGAAGTTGCACAGACAGGCAGTGTTGCAG TGTATTGAGCAGTTCTTGAAGAAGCCTGAAGTGTTGGCGATGCTACCTAGCAGCTGTCAG ATCAACAGTGCTGCATGGGAAAGATGCATTCAAGCTCTGCTGGAGCCGGAAACTTCAGAA CGCTCTCAGGCTGACAGGGCACCACTCGTGTTTCTACTAGATGACAACTTCTACTATCCA AGCATGAGATATGAAGTTTTCCAACTTGCAAGAAAGTATTCGCTGGGCTTTTGCCAGGTG TATCTGCAGTGCACTTTGGAGTCATGCATCAGCAGAAACCAGAGCAGGTCTGAGCCCATT CCCACTGAGGTGATATTGGAGATGACAAAGCGTTTAGAGTCTCCAAATCCGCAGAAAAAC TCATGGGAGACAAACAGCATTTTACTCAACACTTCAGACAGTGTTTCCAAAAATGACATC CAGAGGGTGATGGAGTTGATCTCCTCTGCACTGAGCAACCCGCTGAGCCCGGTTGAGGAC AACACGGAACAAAAGGAAGCTGACCGCCAGAAATGTGCCGCTAGTGTGGTTCACCAGGCA GACCAGACCTGTCGACGCCTGATCTCTGAAGCGATGAAGACTGCCAGAGGT // BADN01076497.1 GeneWise match 1250 3572 172.96 + . BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise cds 1250 1450 0.00 + 0 BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise intron 1451 2257 0.00 + . BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise cds 2258 2513 0.00 + 0 BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise intron 2514 2998 0.00 + . BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise cds 2999 3200 0.00 + 2 BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise intron 3201 3298 0.00 + . BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise cds 3299 3374 0.00 + 1 BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise intron 3375 3476 0.00 + . BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise cds 3477 3572 0.00 + 0 BADN01076497.1-genewise-prediction-1 // genewise output Score 13.56 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000052_2.0 181 CPLETCLQRNGQRP C L+ L NG RP CHLQYHLSGNGLRP BADN01076497.1 -3108 tccctccagagcac gataaatggagtgc ttcatcctgtgcat // >BADN01076497.1.pep CHLQYHLSGNGLRP // >BADN01076497.1.[3108:3065].sp TGTCATCTCCAATATCACCTCAGTGGGAATGGGCTCAGACCT // BADN01076497.1 GeneWise match 3108 3067 13.56 - . BADN01076497.1-genewise-prediction-1 BADN01076497.1 GeneWise cds 3108 3067 0.00 - 0 BADN01076497.1-genewise-prediction-1 //