TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000040_2.0 # Protein # Glutathione peroxidase 7 (GPx7) # Human (Homo sapiens) (187 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 153 5e-42 BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 110 5e-27 BADN01071156.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 62 5e-10 BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 61 9e-10 BADN01049899.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 42 1e-07 BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 50 4e-06 BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 49 8e-06 BADN01103387.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 49 9e-06 BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 48 2e-05 BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 43 0.001 BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 41 0.006 >BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00006370_0006, whole genome shotgun sequence Length = 8336 Score = 153 bits (387), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 69/100 (69%), Positives = 81/100 (81%) Frame = +2 Query: 47 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 106 VSLVVNVASECGFT++HY+ LQQL RD GP+HFNVLAFPCNQFGQQEP S+KEI+SF RR Sbjct: 5564 VSLVVNVASECGFTEEHYKDLQQLHRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRR 5743 Query: 107 TYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWK 146 Y VSFP+FSKIAV GTGA+ +KYL S P + ++ Sbjct: 5744 VYGVSFPLFSKIAVVGTGANNVYKYLVGESAAAPLFKAYR 5863 Score = 78.2 bits (191), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 46/56 (82%) Frame = +1 Query: 132 LAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 187 A+++GKEP WNFWKYL+ +GKVV AW P VSV+E+RP+I +VR++IL K+E+L Sbjct: 6808 FAESAGKEPDWNFWKYLIDVNGKVVDAWGPKVSVKEIRPKIAEMVRQIILKKKEEL 6975 >BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00002749_0006, whole genome shotgun sequence Length = 3280 Score = 110 bits (275), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 50/85 (58%), Positives = 65/85 (76%) Frame = +1 Query: 48 SLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRT 107 SLVVNVAS T+ YR+LQ+L R+LG HFNVLAFPC QFG E ++++IE+FA+ T Sbjct: 1909 SLVVNVASHSEQTETSYRSLQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAFAKST 2088 Query: 108 YSVSFPMFSKIAVTGTGAHPAFKYL 132 Y V+FP FSKI + G+ A+PAFK+L Sbjct: 2089 YGVTFPFFSKIKIMGSEANPAFKFL 2163 >BADN01071156.1 Thunnus orientalis DNA, contig: superscaffoldBa00002749_0007, whole genome shotgun sequence Length = 5226 Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%) Frame = +2 Query: 131 YLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 187 Y + + K P WNFWK+LV P+GKVV W +E VR +++ALVR++IL KR +L Sbjct: 29 YFSDSVKKIPKWNFWKFLVNPEGKVVRFWRADEPMESVRQEVSALVREIILKKRVEL 199 >BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0015, whole genome shotgun sequence Length = 7659 Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 38/68 (55%) Frame = -1 Query: 25 FYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 84 FYD +A + G V +RG V L+ NVAS G T + + L QLQ PH VL F Sbjct: 960 FYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSQLNQLQSKY-PHRLVVLGF 784 Query: 85 PCNQFGQQ 92 PCNQFG Q Sbjct: 783 PCNQFGYQ 760 >BADN01049899.1 Thunnus orientalis DNA, contig: superscaffoldBa00001481_0015, whole genome shotgun sequence Length = 8171 Score = 42.0 bits (97), Expect(2) = 1e-07, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = -2 Query: 43 YRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ 92 +RG+V ++ NVAS+ G T +Y Q+ ++LAFP NQFG Q Sbjct: 5083 FRGNVVIITNVASK*GKTPVNYSQFTQMHAKYAERGLHILAFPSNQFGNQ 4934 Score = 34.3 bits (77), Expect(2) = 1e-07, Method: Compositional matrix adjust. Identities = 15/25 (60%), Positives = 16/25 (64%) Frame = -3 Query: 20 QQEQDFYDFKAVNIRGKLVSLEKYR 44 Q YDF A +I G LVSLEKYR Sbjct: 5256 QTATSIYDFSATDIDGNLVSLEKYR 5182 Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = -1 Query: 89 FGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLA-QTSGK 138 F +EP + +I+ FA+ +Y+ F MFSKI V G AHP +K++ Q +GK Sbjct: 4634 FALKEPGNETQIKQFAQ-SYNAQFDMFSKIDVNGANAHPLWKWMKEQPNGK 4485 >BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00000253_0034, whole genome shotgun sequence Length = 42408 Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = -2 Query: 23 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 82 + YDF+A + G+ + +G V L+VNVAS G T + Y + +L +L Sbjct: 19238 KKIYDFEAKLLTGETFNFSTLQGKVVLIVNVASL*GTTTRDYTQMNELHERYAGKGLVIL 19059 Query: 83 AFPCNQFGQQ 92 PCNQFG Q Sbjct: 19058 GVPCNQFGHQ 19029 >BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00000050_0010, whole genome shotgun sequence Length = 8699 Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 33/68 (48%) Frame = +2 Query: 25 FYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 84 FYD + G+ SL +G V L+ NVAS G T + Y + +L +L Sbjct: 3455 FYDLTVKLLSGETFSLSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYSDKGLVILGV 3634 Query: 85 PCNQFGQQ 92 PCNQFG Q Sbjct: 3635 PCNQFGHQ 3658 >BADN01103387.1 Thunnus orientalis DNA, contig: superscaffoldBa00006370_0005, whole genome shotgun sequence Length = 3405 Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = +1 Query: 21 QEQDFYDFKAVNIRGKLVSLEKYRGSVSLV 50 +++DFY FK VN RGKLVSLEKYRGSVS + Sbjct: 1021 KQKDFYTFKVVNSRGKLVSLEKYRGSVSFL 1110 >BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00001620_0011, whole genome shotgun sequence Length = 10871 Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 39/122 (31%) Frame = -3 Query: 20 QQEQDFYDFKAVNIRGKLVSLEKY------------------------------------ 43 Q + Y+F A +I G VSLEKY Sbjct: 3936 QSAKSIYEFSAKDIDGNEVSLEKYK*TYMYPLKLKLHTNLEEVFCRFFFFFSV*RLLFLI 3757 Query: 44 ---RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI 100 RG V ++VNVAS+ G T +Y L + ++ FPCNQFG Q +N I Sbjct: 3756 FSARGYVCIIVNVASK*GKTKVNYTQLAGMHASYAEKGLRIMGFPCNQFGGQVT*NNLMI 3577 Query: 101 ES 102 + Sbjct: 3576 TA 3571 Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Frame = -2 Query: 92 QEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL-AQTSGK 138 QEP ++ EI+ FA+ Y+ F +FSKI V G AHP +K++ AQ GK Sbjct: 3187 QEPGTDAEIKEFAK-GYNAEFDLFSKIEVNGDNAHPLWKWMKAQPKGK 3047 >BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00000378_0023, whole genome shotgun sequence Length = 10758 Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 27/102 (26%) Frame = +3 Query: 26 YDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFT------DQHYR-------------- 65 Y+ K +N V+ Y G L VN A+ G T QH+R Sbjct: 1794 YNAKTLN-GSNTVNFSDYIGKSVLFVNTATY*GLTLQYVGKKQHHRRHYFV*QCKKTKIF 1970 Query: 66 -------ALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI 100 L L ++ P VL FPCNQFG+QEP EI Sbjct: 1971 YLSILLPELNALHDEMKPFGLTVLGFPCNQFGKQEPGQRHEI 2096 >BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0014, whole genome shotgun sequence Length = 3778 Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 28/114 (24%) Frame = -1 Query: 92 QEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYL-------------- 132 QE +N EI + + + +F +F K V GT HP F YL Sbjct: 3235 QENCTNGEILNLLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPYSL 3056 Query: 133 ---------AQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVR 177 + S + +WNF K+L+ P+G+ + ++ P I L+R Sbjct: 3055 MQDPKFLVWSPISRMDISWNFEKFLIGPEGEPFKRYSKMFPTIDIEPDIQRLLR 2894 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.320 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 125,784,652 Number of extensions: 1627170 Number of successful extensions: 5975 Number of sequences better than 1.0e-02: 11 Number of HSP's gapped: 5974 Number of HSP's successfully gapped: 17 Length of query: 187 Length of database: 228,165,821 Length adjustment: 114 Effective length of query: 73 Effective length of database: 212,996,753 Effective search space: 15548762969 Effective search space used: 15548762969 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)