genewise output Score 526.51 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000662_2.0 254 KVTRKVKSVQMFRKPVASAMQGDRVGVCVTQFDPKLLERGVVCTPGSLQ +VT+KVKSVQMFRKPV+ AMQGDRVGVCVTQFDPKLLERGVVCTPGSL QVTKKVKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLH BADN01010204.1 404 cgaaagatgcatcacgtggacggcgggtgactgcactgcgggtacgtcc atcaatactattgactcgctagagtgtgtcatacattaggttgccgcta ggcgaagggggtggagtgcggattgcgtgagtctaggggtggcctccgt SPP00000662_2.0 303 TLYAAIISVQKIEYYRGALNSRAKFHITVGHETVMARISFFNR--VLPA TLYAA++SV+KI Y++G+L +RAKFHITVGHETVMAR++FF V + TLYAAVVSVRKIGYFKGSLATRAKFHITVGHETVMARVTFFGLPPVGVS BADN01010204.1 551 actggggtgaaagttagtcgacgatcaaggcgagagagattgcccgggt ctaccttctgatgatagctccgcatatctgaacttcgtcttgtcctgtc cctatccgcggacccgcttcctcgcctaggtaacggggccccgatgtca SPP00000662_2.0 350 NENGDSKPTSQEQSANS-FSFDWEFHHLDEHLTSQAEGGKG-EPQQWAL D+KP + S + F+FD E+ + D +LT Q E G P+QWAL EPPSDTKPPPEPCSLETPFTFDREYFYQDAYLTGQGEASSGPDPEQWAL BADN01010204.1 698 gcctgaacccgctttgactatgagtttcggtcagcgggatgcgcgctgt acccacacccacgctacctctagaataaacatcgagacgcgcacaagct gctactaataggcaaaacccccggcccacatcctgaggtaaccagagtg SPP00000662_2.0 397 LEFERPVTCPPLCLVIGSRLDSDIHGNTCRLAFHGKLLEGFEDKNYTET LEFERPVTCP LCLVIGS+LD+DIH N CRLAF G+LL+GFEDK Y ET LEFERPVTCPSLCLVIGSKLDTDIHANACRLAFQGRLLQGFEDKGYAET BADN01010204.1 845 tgtgccgatctctcgagtacgagacgagtctgtcgccccgtggagtgga tatagctcgcctgtttgcatacatacacggtctaggttagtaaagacac agtggacatcacttgtccgacaccctcactgccactggggtatacttgt SPP00000662_2.0 446 ALPRLKISKDKQKEGAVER VTDDYTV ALPRL+I K K KEG VER VTDDYTV ALPRLRIYKTKHKEGQVER VTDDYTV BADN01010204.1 992 gcccccataaacaggcggaGTGAGTG Intron 1 CAGgaggtag ctcgtgtaacaaaagatag<0-----[1049 : 3225]-0>tcaaact cgtcgcccgcacggaggag gtttttg SPP00000662_2.0 472 IGRNLFKKETNLQLFVGLKVTLSTGEAGSIEGGFGQSGKIKIRIP IGRNLFKKETNLQLFVGLKVTLSTGE G IEGGFGQSGK+KIR+ IGRNLFKKETNLQLFVGLKVTLSTGETGVIEGGFGQSGKFKIRVQ BADN01010204.1 3247 agcactaagaaccctggtagattaggaggagggtgcagataacgc tggattaaacatatttgtatctccgacgttaggtgaggatatgta ccccgcgggccggctggggcaggatgcttcgcgcagcggtgtaaa SPP00000662_2.0 517 GLKEETKQLLSSSSKKKGKGGSK GL ETKQLLSS+SKKKGKGG K E:E[gag] GLLPETKQLLSSTSKKKGKGGGK BADN01010204.1 3382 GGTAAGGA Intron 2 CAGAGgcccgaacttttataaagaggga <1-----[3383 : 6003]-1> gttcacaattccccaaagaggga ttcaacgggactctggaggggca SPP00000662_2.0 541 NESPKLEEAKPDAQPVTIHLNFKRYIYDPHKKMVQS EE K D+QPV+IHL+FKRY++DPHKKMVQS GGPANEEEPKADSQPVSIHLHFKRYVFDPHKKMVQS BADN01010204.1 6075 ggcgagggcaggtccgaaccctactgtgccaaagct ggccaaaacacacactgtatatagattacaaattac caaataggcaattgttctcgtcgctgttctgggtgg // Making a E in phase 1 intron >BADN01010204.1.pep QVTKKVKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLHTLYAAVVSVRK IGYFKGSLATRAKFHITVGHETVMARVTFFGLPPVGVSEPPSDTKPPPEPCSLETPFTFD REYFYQDAYLTGQGEASSGPDPEQWALLEFERPVTCPSLCLVIGSKLDTDIHANACRLAF QGRLLQGFEDKGYAETALPRLRIYKTKHKEGQVERVTDDYTVIGRNLFKKETNLQLFVGL KVTLSTGETGVIEGGFGQSGKFKIRVQEGLLPETKQLLSSTSKKKGKGGGKGGPANEEEP KADSQPVSIHLHFKRYVFDPHKKMVQS // >BADN01010204.1.[404:6182].sp CAGGTGACCAAGAAAGTAAAGTCGGTGCAGATGTTTCGGAAGCCAGTGTCTGGGGCCATG CAGGGAGATCGTGTGGGCGTGTGTGTGACACAGTTTGACCCTAAACTGTTGGAGCGGGGT GTGGTGTGCACCCCTGGCTCCCTGCATACCCTCTATGCAGCTGTCGTCTCGGTCAGGAAG ATAGGCTACTTCAAGGGCTCTCTTGCCACCCGTGCCAAGTTCCACATTACAGTGGGGCAT GAAACAGTCATGGCGAGGGTGACCTTCTTCGGCCTGCCACCTGTGGGTGTCTCAGAGCCC CCTTCAGACACTAAACCACCTCCAGAGCCGTGCTCATTAGAAACACCCTTCACCTTCGAC AGGGAGTACTTCTACCAAGACGCATATCTCACCGGTCAGGGAGAGGCGAGTTCAGGACCC GACCCAGAGCAATGGGCTTTGTTAGAGTTTGAGCGGCCAGTCACATGTCCCTCACTCTGT CTTGTGATTGGCTCCAAGCTAGACACAGACATCCACGCTAACGCATGCCGTTTGGCCTTC CAAGGCCGTCTGCTGCAGGGGTTTGAAGATAAAGGCTATGCTGAGACTGCCCTGCCTCGC CTGCGCATCTACAAGACCAAACACAAGGAGGGACAGGTGGAAAGGGTGACTGATGATTAT ACTGTGATCGGCCGCAACCTGTTCAAGAAGGAGACCAACCTGCAGCTCTTTGTGGGGTTG AAGGTCACATTGTCGACAGGTGAGACCGGTGTTATCGAGGGCGGGTTCGGACAGAGCGGG AAGTTTAAGATTCGAGTACAAGAGGGTCTTCTCCCAGAAACCAAGCAGTTGTTATCCTCT ACCTCTAAGAAGAAAGGGAAGGGGGGGGGCAAAGGCGGACCAGCAAATGAAGAGGAGCCC AAAGCAGATTCTCAGCCTGTTAGCATTCACCTGCATTTCAAGCGCTATGTGTTTGATCCC CATAAGAAGATGGTTCAGTCG // BADN01010204.1 GeneWise match 404 6182 527.51 + . BADN01010204.1-genewise-prediction-1 BADN01010204.1 GeneWise cds 404 1048 0.00 + 0 BADN01010204.1-genewise-prediction-1 BADN01010204.1 GeneWise intron 1049 3225 0.00 + . BADN01010204.1-genewise-prediction-1 BADN01010204.1 GeneWise cds 3226 3382 0.00 + 0 BADN01010204.1-genewise-prediction-1 BADN01010204.1 GeneWise intron 3383 6003 0.00 + . BADN01010204.1-genewise-prediction-1 BADN01010204.1 GeneWise cds 6004 6182 0.00 + 2 BADN01010204.1-genewise-prediction-1 // genewise output Score 20.07 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000662_2.0 404 TCPPLCLVI TCP LCLV+ TCPSLCLVL BADN01010204.1 -1041 atcttttgt cgcctgttt ctccgtgcg // >BADN01010204.1.pep TCPSLCLVL // >BADN01010204.1.[1041:1013].sp ACCTGTCCCTCCTTGTGTTTGGTCTTG // BADN01010204.1 GeneWise match 1041 1015 20.07 - . BADN01010204.1-genewise-prediction-1 BADN01010204.1 GeneWise cds 1041 1015 0.00 - 0 BADN01010204.1-genewise-prediction-1 //