genewise output Score 285.53 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000662_2.0 98 GAQIIDLMMLVVDVVKGMQTQTAECLLIGQLTCSRMVVILNKTDLLPSD GAQIIDLMMLVVDVVKG+QTQTAECLLIG+LTC RMVVILNK DLLP++ GAQIIDLMMLVVDVVKGVQTQTAECLLIGELTCPRMVVILNKIDLLPAN BADN01010203.1 1203 ggcaagcaacgggggaggcacaggtccaggcatccaggataaagcccga gcattattttttattagtacaccagtttgatcgcgtttttaatattcca gtactcggggggcggagagtgtagtggaaagtctcggccgcgtcagacc SPP00000662_2.0 147 KRQVAIDKMTKRMHKTLENT FKD KRQ AI+KMTKR+HKTLE T FK+ KRQSAIEKMTKRLHKTLEGT R:R[aga] FKE BADN01010203.1 1350 aacagagaaaaaccaacggaAGGTCTGCA Intron 1 CAGAtag agagctaatcagtaactagc <2-----[1412 : 1666]-2> taa gagtccgagcgagcaaggcc tgg SPP00000662_2.0 171 CPIIAVAAKPGGPEAPDTDEPQGITELID CPIIAVAAKPGGPEA DT+EPQG+ ELI+ CPIIAVAAKPGGPEAADTEEPQGVPELIE BADN01010203.1 1677 tcaaggggacggcggggaggccggcgtagGTAAAGT Intron 2 gcttctccacggcaccacaacagtcatta<0-----[1764 : 2162] tatatgaggtacggttcaagagagagacg SPP00000662_2.0 200 LLKAQSFLPHRDPSGSLLMAVDHCFSIRGQGTVITGTILQGSLSVN LLK Q++LP RDP G LLMAVDHCFSIRGQGTV+TGTILQGSL++N LLKKQTYLPQRDPGGDLLMAVDHCFSIRGQGTVMTGTILQGSLAIN BADN01010203.1 2160 CAGctaacatcccagcgggccagggctttacgcgagaagaaccgtcgaa -0>ttaaacatcagacggatttctaagtctggagcttcgcttagctcta tggagacctgaccatctggtgctccccctgaacgagccgggagccc SPP00000662_2.0 246 DNVEIPALKV D VEIPALKV DTVEIPALKV BADN01010203.1 2301 gaggacgcag actatcctat cagacaaaga // Making a R in phase 2 intron >BADN01010203.1.pep GAQIIDLMMLVVDVVKGVQTQTAECLLIGELTCPRMVVILNKIDLLPANKRQSAIEKMTK RLHKTLEGTRFKECPIIAVAAKPGGPEAADTEEPQGVPELIELLKKQTYLPQRDPGGDLL MAVDHCFSIRGQGTVMTGTILQGSLAINDTVEIPALKV // >BADN01010203.1.[1203:2330].sp GGGGCTCAAATCATTGACCTGATGATGCTGGTGGTGGACGTGGTGAAAGGGGTACAGACT CAGACTGCAGAGTGTCTGCTGATAGGAGAACTGACTTGCCCTCGCATGGTGGTCATCTTG AACAAGATTGACCTACTGCCAGCCAACAAGAGACAGAGTGCCATCGAGAAAATGACCAAG AGACTGCACAAAACACTGGAGGGCACCAGATTTAAGGAGTGTCCAATTATAGCTGTGGCA GCGAAGCCTGGAGGCCCGGAGGCTGCTGACACAGAAGAGCCACAGGGAGTGCCAGAGTTA ATCGAGCTTTTGAAGAAACAGACATACCTCCCTCAGAGAGACCCCGGAGGTGACCTTCTG ATGGCTGTGGACCATTGCTTCTCCATCCGCGGTCAGGGAACAGTCATGACAGGGACCATC CTGCAGGGGTCACTGGCCATCAACGACACAGTGGAAATCCCAGCACTAAAGGTA // BADN01010203.1 GeneWise match 1203 2330 285.53 + . BADN01010203.1-genewise-prediction-1 BADN01010203.1 GeneWise cds 1203 1411 0.00 + 0 BADN01010203.1-genewise-prediction-1 BADN01010203.1 GeneWise intron 1412 1666 0.00 + . BADN01010203.1-genewise-prediction-1 BADN01010203.1 GeneWise cds 1667 1763 0.00 + 1 BADN01010203.1-genewise-prediction-1 BADN01010203.1 GeneWise intron 1764 2162 0.00 + . BADN01010203.1-genewise-prediction-1 BADN01010203.1 GeneWise cds 2163 2330 0.00 + 0 BADN01010203.1-genewise-prediction-1 // genewise output Score 15.64 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000662_2.0 399 FERPVTCPPLCLV + +P+T P CL+ YNKPITSPTDCLL BADN01010203.1 -625 taacaatcagtct aaactccccagtt tcagttacaccaa // >BADN01010203.1.pep YNKPITSPTDCLL // >BADN01010203.1.[625:585].sp TATAACAAACCGATTACTTCACCCACAGACTGCCTATTA // BADN01010203.1 GeneWise match 625 587 15.64 - . BADN01010203.1-genewise-prediction-1 BADN01010203.1 GeneWise cds 625 587 0.00 - 0 BADN01010203.1-genewise-prediction-1 //