TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= tr|B8JLM0|B8JLM0_DANRE Uncharacterized protein OS=Danio rerio GN=cept1a PE=3 SV=1 (426 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01095793.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 171 8e-46 BADN01043200.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 154 2e-39 BADN01043201.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 105 4e-23 BADN01095794.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 100 3e-21 BADN01095792.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 96 6e-20 BADN01095791.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 78 7e-14 BADN01047755.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 68 1e-10 >BADN01095793.1 Thunnus orientalis DNA, contig: superscaffoldBa00005213_0010, whole genome shotgun sequence Length = 2004 Score = 171 bits (433), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/139 (63%), Positives = 95/139 (68%), Gaps = 33/139 (23%) Frame = -3 Query: 109 YYCPTATEQAPTWAYLACALGLFIYQSLDAIDGKQARRTNSSTPLGELFDHGCDSLST-- 166 Y C QAP WAYL CA+GLF+YQSLDAIDGKQARRTNSS+PLGELFDHGCDSLST Sbjct: 1639 YVCVCVMFQAPLWAYLLCAVGLFVYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLSTG* 1460 Query: 167 -VFV------------------------------VLGTCIAVQLGTYPDWMFFCCFVGIF 195 VF+ VLGT IAVQ+GT PDWMFFCCF G+F Sbjct: 1459 FVFLFASISLSLSTSDEALFNTVCVVVCLCAVFVVLGTSIAVQMGTNPDWMFFCCFAGMF 1280 Query: 196 MFYCAHWQTYVSGTLRFGI 214 MFYCAHWQTYVSGTLRFG+ Sbjct: 1279 MFYCAHWQTYVSGTLRFGM 1223 >BADN01043200.1 Thunnus orientalis DNA, contig: superscaffoldBa00001173_0003, whole genome shotgun sequence Length = 3645 Score = 154 bits (390), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 123/240 (51%), Gaps = 77/240 (32%) Frame = -3 Query: 243 IPVLNIQVKIIPALFTLLGAVFSCTNYFRVIFTGGMGKNGSTIA---------------- 286 +P++ +++ P + + GA++SC NYF VI GG+GKNGST+A Sbjct: 2413 LPIIGLKMYFFPIVGIIGGALYSCQNYFHVILNGGVGKNGSTVAVRPFQCHLYKADKCAV 2234 Query: 287 -----------GTSVLSPSFHIGVVITLALMIYKKSSVQLFEKHPCLYVLAFGFVSAKLT 335 TSVLSP HIG+++TLA +I+KKSS QLFE HPCLY+LAFG V AK++ Sbjct: 2233 IVRLINSPAF*DTSVLSPGLHIGLILTLAFIIFKKSSSQLFENHPCLYLLAFGMVIAKIS 2054 Query: 336 NRLVV-------------------------------------------------AHMTKS 346 N+LVV AHMTKS Sbjct: 2053 NKLVVCLTSLAFIFNVVLHFTVASV*TQFQARHVDTEYIKSVFS*PHVYPFC*IAHMTKS 1874 Query: 347 EMHRYDLAFTGPALLFLNQYFNSFINEYCLLWVALV-LSAFDLVRYCVSVCNQIATHLNI 405 E+H D AF GP LLFLNQYFNSFI+E+ +LW+A+V + +C+ A+ L+I Sbjct: 1873 ELHLPDTAFIGPGLLFLNQYFNSFIDEHIVLWIAMVSFGHAHTSLFFNHICHTFASELDI 1694 Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 51/112 (45%), Positives = 68/112 (60%), Gaps = 30/112 (26%) Frame = -1 Query: 162 DSLSTVFVVLGTCIAVQLGTYPDWMFFCCFVGIFMFYCAHWQTYVSGTLRFGI------- 214 LS VFV +GTC++ +G YP+WMFFC F+G+FMF+CAHWQTYVSGTLRFG+ Sbjct: 3210 SCLSAVFVAVGTCVSCGIGRYPNWMFFCGFIGMFMFFCAHWQTYVSGTLRFGL*VTFSSV 3031 Query: 215 -----------------------IDVTEVQIFIISMYLLAAIGGTAFWQSMI 243 +DVTEVQ+ I+ MYL++A GG + WQ+ + Sbjct: 3030 LLFFFPLNCLFN*LSVSCYLLCRVDVTEVQVAIMVMYLMSAFGGVSLWQTTV 2875 Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 41/55 (74%), Positives = 48/55 (87%) Frame = -3 Query: 117 QAPTWAYLACALGLFIYQSLDAIDGKQARRTNSSTPLGELFDHGCDSLSTVFVVL 171 Q P WA++ ALGLF+YQSLDAIDGKQARRTNSS+ LGELFDHGCD++ST V+L Sbjct: 3445 QGPAWAFILSALGLFVYQSLDAIDGKQARRTNSSSALGELFDHGCDAVSTGAVLL 3281 >BADN01043201.1 Thunnus orientalis DNA, contig: superscaffoldBa00001173_0004, whole genome shotgun sequence Length = 3227 Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 46/71 (64%), Positives = 58/71 (81%) Frame = -3 Query: 47 LSRQQLKRLEEHRYSSEGRSLLEPFMQGFWCWLVSKVPLWMAPNLITIVGLATNIVSTLI 106 LS QLKRLEEH+Y++ GRSL EP Q +W WLV K+P W+APN +TIVGL NI++T++ Sbjct: 1875 LSPAQLKRLEEHKYNASGRSLFEPPCQIYWNWLVQKIPTWIAPNTLTIVGLVVNILTTVV 1696 Query: 107 LVYYCPTATEQ 117 LVYYCPTATE+ Sbjct: 1695 LVYYCPTATEE 1663 >BADN01095794.1 Thunnus orientalis DNA, contig: superscaffoldBa00005213_0011, whole genome shotgun sequence Length = 5586 Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 45/60 (75%), Positives = 53/60 (88%) Frame = -3 Query: 58 HRYSSEGRSLLEPFMQGFWCWLVSKVPLWMAPNLITIVGLATNIVSTLILVYYCPTATEQ 117 +RYSS GRSLLEP MQ +W WLV +VP W+APNLITI+GLATN+ +TL+LVYYCPTATEQ Sbjct: 1426 YRYSSAGRSLLEPLMQRYWEWLVGRVPSWIAPNLITIIGLATNVFTTLVLVYYCPTATEQ 1247 Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/28 (71%), Positives = 22/28 (78%) Frame = -2 Query: 33 PSLLTRLMELPVARLSRQQLKRLEEHRY 60 P +L RL+ELP LSR QLKRLEEHRY Sbjct: 2804 PGVLRRLIELPSPPLSRHQLKRLEEHRY 2721 >BADN01095792.1 Thunnus orientalis DNA, contig: superscaffoldBa00005213_0009, whole genome shotgun sequence Length = 2121 Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 45/55 (81%), Positives = 51/55 (92%) Frame = -1 Query: 287 GTSVLSPSFHIGVVITLALMIYKKSSVQLFEKHPCLYVLAFGFVSAKLTNRLVVA 341 GTSVLSP HIG VI LA+MIYKKS+VQLFEKHPCLY+LAFGFVSAK+TN+LVV+ Sbjct: 201 GTSVLSPVLHIGSVIILAMMIYKKSAVQLFEKHPCLYILAFGFVSAKITNKLVVS 37 Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 35/44 (79%), Positives = 42/44 (95%) Frame = -2 Query: 243 IPVLNIQVKIIPALFTLLGAVFSCTNYFRVIFTGGMGKNGSTIA 286 IP+LNIQ+K++PA+ T LGA+FSCTNYFRVIFTGG+GKNGSTIA Sbjct: 527 IPILNIQMKMVPAICTFLGAIFSCTNYFRVIFTGGVGKNGSTIA 396 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/29 (82%), Positives = 28/29 (96%) Frame = -3 Query: 215 IDVTEVQIFIISMYLLAAIGGTAFWQSMI 243 IDVTEVQIFII MYLLAA+GG+AFWQS++ Sbjct: 940 IDVTEVQIFIIIMYLLAAVGGSAFWQSLV 854 >BADN01095791.1 Thunnus orientalis DNA, contig: superscaffoldBa00005213_0008, whole genome shotgun sequence Length = 3636 Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 35/43 (81%), Positives = 39/43 (90%) Frame = -2 Query: 340 VAHMTKSEMHRYDLAFTGPALLFLNQYFNSFINEYCLLWVALV 382 VAHMTKSEMH +DLAF GP LLFLNQYFNSFI+EY +LW+ALV Sbjct: 3632 VAHMTKSEMHLHDLAFLGPGLLFLNQYFNSFIDEYLVLWIALV 3504 Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/33 (75%), Positives = 28/33 (84%) Frame = -3 Query: 382 VLSAFDLVRYCVSVCNQIATHLNIRVFSIQPPS 414 V+S FDLVRYCVSVCNQIA HL+I VF I+P S Sbjct: 2692 VISLFDLVRYCVSVCNQIACHLHIFVFKIKPCS 2594 >BADN01047755.1 Thunnus orientalis DNA, contig: superscaffoldBa00001382_0012, whole genome shotgun sequence Length = 9087 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 4/87 (4%) Frame = -3 Query: 128 LGLFIYQSLDAIDGKQARRTNSSTPLGELFDHGCDSLSTVFVVLGTCIAV----QLGTYP 183 L +F+ +D +DGKQARRTNSSTPLGELFDHG DS + +F V T ++ + G Sbjct: 1201 LCVFLCFCVDGVDGKQARRTNSSTPLGELFDHGLDSWACIFFV-ATVYSIFGRGESGVGV 1025 Query: 184 DWMFFCCFVGIFMFYCAHWQTYVSGTL 210 +++ +V +F F +HW+ Y +G L Sbjct: 1024 ATLYYILWVVLFSFILSHWEKYNTGIL 944 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.328 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 397,027,554 Number of extensions: 6920896 Number of successful extensions: 58547 Number of sequences better than 1.0e-02: 8 Number of HSP's gapped: 58510 Number of HSP's successfully gapped: 15 Length of query: 426 Length of database: 228,165,821 Length adjustment: 124 Effective length of query: 302 Effective length of database: 211,666,133 Effective search space: 63923172166 Effective search space used: 63923172166 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 44 (21.6 bits)