TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= tr|Q7T2C8|Q7T2C8_DANRE Thioredoxin reductase 1 OS=Danio rerio GN=txnrd1 PE=2 SV=1 (600 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01025334.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 160 8e-40 BADN01057254.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 82 6e-23 BADN01034111.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 106 2e-22 BADN01025333.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 91 2e-17 BADN01035419.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 62 2e-08 BADN01034113.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 54 4e-06 BADN01055795.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 52 2e-05 BADN01034114.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 51 5e-05 BADN01034115.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 46 0.002 BADN01024054.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 45 0.003 >BADN01025334.1 Thunnus orientalis DNA, contig: superscaffoldBa00000523_0006, whole genome shotgun sequence Length = 11646 Score = 160 bits (405), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 87/141 (61%), Gaps = 48/141 (34%) Frame = -1 Query: 157 GLGGTCVNVGCIPKKLMHQTALLGTAMEDARKFGWEFAEQ-------------------- 196 GLGGTCVNVGCIPKKLMHQTALLGTA++DARKFGWEF E Sbjct: 4539 GLGGTCVNVGCIPKKLMHQTALLGTALQDARKFGWEFDETGEGSEQRPRRSRRGDIAPAC 4360 Query: 197 ----------------------------VTHNWETMKTAVNNYIGSLNWGYRVSLRDKNV 228 V HNWETMKTAVNNYIGSLNWGYRV+LRDKNV Sbjct: 4359 RGKSEASLFRNHLLSFH*FH*WVSVCPPVKHNWETMKTAVNNYIGSLNWGYRVALRDKNV 4180 Query: 229 NYVNAYAEFVEPHKIKATNKR 249 NYVNAYAEF+EPHKIK T R Sbjct: 4179 NYVNAYAEFIEPHKIKVTAVR 4117 Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/79 (87%), Positives = 75/79 (94%) Frame = -1 Query: 282 TSDDLFSLPYCPGKTLVVGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMADRAGE 341 TSDDLFSL YCPGKTLV+GASYVALECGGFLAGLGLDVT+MVRSILLRGFDQDMA+RAGE Sbjct: 3201 TSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSILLRGFDQDMANRAGE 3022 Query: 342 YMETHGVKFLRKFVPTKIE 360 +ME HGVKFLRKF+P K+ Sbjct: 3021 HMEEHGVKFLRKFIPVKVS 2965 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 48/54 (88%), Positives = 53/54 (98%) Frame = -1 Query: 415 KNGKVPVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGATMKC 468 +NGK+PVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAG+LLARRLYAG+T+K Sbjct: 993 RNGKIPVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGRLLARRLYAGSTLKV 832 Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 36/39 (92%), Positives = 39/39 (100%) Frame = -3 Query: 244 KATNKRGKETFYTAAQFVLATGERPRYLGIPGDKEFCIT 282 +ATNKRGKETFYTAA+FVLATGERPRYLGIPGDKE+CIT Sbjct: 3760 QATNKRGKETFYTAAKFVLATGERPRYLGIPGDKEYCIT 3644 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/44 (65%), Positives = 40/44 (90%) Frame = -2 Query: 1 MPPIENDAGREQIRSKIKELIDSSAVVVFSKSFCPFCVKVKDLF 44 MPPIEND G+ +++S+I++LIDS+ V+VFSKS+CPFCVKV+ LF Sbjct: 9929 MPPIENDTGKNELKSRIQQLIDSNQVIVFSKSYCPFCVKVRYLF 9798 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/38 (78%), Positives = 34/38 (89%) Frame = -1 Query: 60 EDGTNYQDLLHEMTGQKTVPNVFINKKHIGGCDNTMKA 97 EDGTNYQ++L EMTGQKTVPNVFINK H+GGCD TM+ Sbjct: 7614 EDGTNYQEMLLEMTGQKTVPNVFINKTHLGGCDKTMQV 7501 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/37 (81%), Positives = 33/37 (89%) Frame = -3 Query: 96 KAHKDGVLQKLLGEGSEVYDYDLIVIGGGSGGLACSK 132 +AHKDG LQ+LLG +E YDYDLIVIGGGSGGLACSK Sbjct: 6097 QAHKDGSLQQLLGGENEAYDYDLIVIGGGSGGLACSK 5987 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 46/70 (65%) Frame = -2 Query: 321 IMVRSILLRGFDQDMADRAGEYMETHGVKFLRKFVPTKIEQLEAGTPGRIKVTAKSTESE 380 I+V+S ++ +DR+ + V L +IE+LEAGTPG++KVTAKSTE++ Sbjct: 2759 IIVQSCIISFISPLTSDRSTKIFFFFSVLLLCCVCVCQIEELEAGTPGKLKVTAKSTETD 2580 Query: 381 EVFEGEYNTV 390 E+ EGEYNTV Sbjct: 2579 EILEGEYNTV 2550 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/25 (84%), Positives = 24/25 (96%) Frame = -2 Query: 133 EAATLGKKVMVLDYVVPTPQGTAWG 157 EAA LGKKVMVLD+VVPTP+GT+WG Sbjct: 4739 EAAMLGKKVMVLDFVVPTPKGTSWG 4665 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/26 (84%), Positives = 23/26 (88%) Frame = -3 Query: 390 VLIAVGRDACTGKIGLDKAGVKINEK 415 VLIAVGRDACT KIGLDK GVK+N K Sbjct: 2191 VLIAVGRDACTDKIGLDKTGVKVNTK 2114 >BADN01057254.1 Thunnus orientalis DNA, contig: superscaffoldBa00001857_0006, whole genome shotgun sequence Length = 19607 Score = 82.0 bits (201), Expect(2) = 6e-23, Method: Compositional matrix adjust. Identities = 39/70 (55%), Positives = 51/70 (72%) Frame = +2 Query: 282 TSDDLFSLPYCPGKTLVVGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMADRAGE 341 +S+DL SLP+ PG+TLV+G S LEC GFL+GLGL VT+M++ LL GFDQ MA + Sbjct: 7838 SSEDLLSLPHSPGRTLVLGGSAEGLECAGFLSGLGLPVTVMLQPDLLPGFDQKMAQKIEN 8017 Query: 342 YMETHGVKFL 351 +M GV+FL Sbjct: 8018 HMLVAGVEFL 8047 Score = 48.9 bits (115), Expect(2) = 6e-23, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 30/39 (76%) Frame = +3 Query: 244 KATNKRGKETFYTAAQFVLATGERPRYLGIPGDKEFCIT 282 + T+ G++ TA V+ATG+RP+YLG+PGD+++C+T Sbjct: 7632 QVTDMNGRKRRLTAETLVIATGDRPQYLGVPGDRQYCLT 7748 Score = 57.0 bits (136), Expect(2) = 6e-16, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 30/40 (75%) Frame = +2 Query: 502 LEVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNLRVIGF 541 L+VYHS +WPLE+T+P R+ N CY K+IC+ D++R F Sbjct: 10478 LQVYHSYYWPLEWTLPARNKNSCYVKVICHIPDHVRTTFF 10597 Score = 50.4 bits (119), Expect(2) = 6e-16, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 27/38 (71%) Frame = +1 Query: 467 KCDYVNVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEV 504 +CDY NVPT V TP+EY +CG EEKA +G+ +EV Sbjct: 10285 QCDYTNVPTVVLTPVEYAACGLSEEKANLTFGEATIEV 10398 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/49 (57%), Positives = 37/49 (75%) Frame = +1 Query: 538 VIGFHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEIFTTME 586 V+G H +GPNAG++ QGF AAMKCG+TK QLD T+G+HP A++ T Sbjct: 12334 VVGLHVMGPNAGDILQGFVAAMKCGLTKRQLDATVGLHPGSAQVSTAFS 12480 Score = 56.6 bits (135), Expect(2) = 4e-10, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 35/49 (71%) Frame = +2 Query: 415 KNGKVPVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAG 463 +G++ VN+ +QT+V HIYAIG + G+ T +++ AG LLA RLYAG Sbjct: 9908 SSGRILVNERDQTSVDHIYAIGSVQHGRPTTTGLSVHAGTLLAHRLYAG 10054 Score = 31.2 bits (69), Expect(2) = 4e-10, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +1 Query: 390 VLIAVGRDACTGKIGLDKAGVKINEK 415 VL++VGR ACT IGL GV+ +++ Sbjct: 9739 VLLSVGRKACTSNIGLQCVGVQCSQE 9816 >BADN01034111.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0016, whole genome shotgun sequence Length = 5636 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 77/162 (47%), Gaps = 74/162 (45%) Frame = +2 Query: 114 YDYDLIVIGGGSGGLACSKE---------------------------------AATLGKK 140 YDYDL+VIGGGSGGLACSKE AA LG+K Sbjct: 1703 YDYDLVVIGGGSGGLACSKEGEIFSNACA*CSSMLCTVISI***PDDIYLWFTAAQLGQK 1882 Query: 141 VMVLDYVVP-------------------------------TPQ----------GTAWGLG 159 V VLDYV P TP GT WG+G Sbjct: 1883 VAVLDYVEPSVKGKIHFLCCQLQNYKNKFPLNITWN*DSKTPS*SM*EILFQTGTKWGIG 2062 Query: 160 GTCVNVGCIPKKLMHQTALLGTAMEDARKFGWEFAEQVTHNW 201 GTCVNVGCIPKKLMHQ ALLG A++DA+K+GW+ + + H+W Sbjct: 2063 GTCVNVGCIPKKLMHQAALLGAAVKDAKKYGWQISGPICHDW 2188 >BADN01025333.1 Thunnus orientalis DNA, contig: superscaffoldBa00000523_0005, whole genome shotgun sequence Length = 4849 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 40/45 (88%), Positives = 42/45 (93%) Frame = -2 Query: 537 RVIGFHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEI 581 RVIGFHYLGPNAGEVTQGFG AMKCG TK+QLD TIGIHPTCAE+ Sbjct: 2418 RVIGFHYLGPNAGEVTQGFGTAMKCGATKEQLDGTIGIHPTCAEV 2284 Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 30/36 (83%), Positives = 36/36 (100%) Frame = -3 Query: 502 LEVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNLR 537 ++VYHSLFWPLEFTVPGRDNN+CY+K+ICNKLDN+R Sbjct: 2669 VQVYHSLFWPLEFTVPGRDNNRCYSKLICNKLDNVR 2562 Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/46 (63%), Positives = 39/46 (84%) Frame = -1 Query: 459 RLYAGATMKCDYVNVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEV 504 +L ++CDY+NVPTTVFTP+EYGSCG E++AI++YGQEN+EV Sbjct: 3667 KLELSVFVQCDYINVPTTVFTPLEYGSCGLSEDRAIELYGQENVEV 3530 >BADN01035419.1 Thunnus orientalis DNA, contig: superscaffoldBa00000857_0017, whole genome shotgun sequence Length = 21348 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%) Frame = -1 Query: 18 KELIDSSAVVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLMEDGTNYQDLLHEMTGQKT 77 +E++ + VV+FSK+ CP+C K++F E+ Y IELD DG Q+ L +MTG +T Sbjct: 19140 QEMVSQNCVVIFSKTTCPYCKMAKNVFNEIGATYKVIELDEHNDGRRLQEALAQMTGART 18961 Query: 78 V 78 V Sbjct: 18960 V 18958 >BADN01034113.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0018, whole genome shotgun sequence Length = 8232 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/32 (78%), Positives = 27/32 (84%) Frame = +3 Query: 302 SYVALECGGFLAGLGLDVTIMVRSILLRGFDQ 333 S VALEC GFL G+GLD T+MVRSI LRGFDQ Sbjct: 2886 SDVALECAGFLTGIGLDTTVMVRSIALRGFDQ 2981 >BADN01055795.1 Thunnus orientalis DNA, contig: superscaffoldBa00001778_0013, whole genome shotgun sequence Length = 5933 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 29/49 (59%) Frame = +1 Query: 537 RVIGFHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEIFTTM 585 +V+G H G E+ QGF A+K G TK D TI IHPT +E F TM Sbjct: 4036 QVVGLHMQGLGCDEMLQGFAVAIKMGATKSDFDKTIAIHPTSSEEFVTM 4182 >BADN01034114.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0019, whole genome shotgun sequence Length = 6831 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 34/49 (69%) Frame = +3 Query: 392 IAVGRDACTGKIGLDKAGVKINEKNGKVPVNDEEQTNVPHIYAIGDILE 440 +A GR T +GLDK GV++N + GK+ V +E T+VP+IYA GDI E Sbjct: 2715 LASGRAPETKALGLDKLGVQLNNETGKIVVAADESTSVPNIYAFGDIGE 2861 >BADN01034115.1 Thunnus orientalis DNA, contig: superscaffoldBa00000810_0020, whole genome shotgun sequence Length = 4980 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 26/41 (63%) Frame = +3 Query: 560 KCGITKDQLDNTIGIHPTCAEIFTTMEVTKSSGGDITQSGC 600 +CG T L T+GIHPTCAE + +TK SG D T +GC Sbjct: 3339 RCGATYSHLLKTVGIHPTCAEELIKINITKRSGLDPTVTGC 3461 >BADN01024054.1 Thunnus orientalis DNA, contig: superscaffoldBa00000486_0035, whole genome shotgun sequence Length = 4245 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%) Frame = +1 Query: 23 SSAVVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLMEDGTNYQDLLHEMTGQKTVPNVF 82 S V V+S CP C++ K L V +++ + + + E+TG+ TVP +F Sbjct: 3376 SGRVTVYSIQGCPHCMQAKATLGHLGVPVCDVDIGRHPE---LRARVKELTGRSTVPQIF 3546 Query: 83 INKKHIGGCDNTMK 96 N H+GG D+ K Sbjct: 3547 FNSIHVGGNDDLQK 3588 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.318 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 462,831,303 Number of extensions: 6735038 Number of successful extensions: 24141 Number of sequences better than 1.0e-02: 10 Number of HSP's gapped: 24139 Number of HSP's successfully gapped: 29 Length of query: 600 Length of database: 228,165,821 Length adjustment: 127 Effective length of query: 473 Effective length of database: 211,266,947 Effective search space: 99929265931 Effective search space used: 99929265931 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 45 (21.9 bits)