genewise output
Score 123.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000657_2.0   14 GYEPRYQELKRVVTAEFTDADVSGFVGRQ                     
                     GYEPRYQEL RVV  EF DA VSGFVGR+                     
                     GYEPRYQELARVVKGEFPDAAVSGFVGRK                     
BADN01032869.1  1051 gtgcctcgcgcggaggtcggggtgtggaa                     
                     gaacgaaatcgttagatcacctcgttgga                     
                     acacctggccgttgtgtctgtgaccgaaa                     


SPP00000657_2.0   43                           SFEIEINGQLIFSKLETSGFPYE 
                                               SFEIEINGQL+FSK ET GFPYE 
                               G:S[agc]        SFEIEINGQLVFSKFETGGFPYE 
BADN01032869.1  1138 AGTAAGTA  Intron 1   TAGGCatgagaagccgttatgaggtctg 
                      <1-----[1139 : 1311]-1>  gtatatagatttcatacggtcaa 
                                               ctgcactggtcccgtgttccatg 


SPP00000657_2.0   67 DD                       IMGVIQRAYDGQPVEKITKSQPPC 
                     DD                       IM  +Q AYDG+ V+KITKS+ PC 
                     DD                       IMNAVQDAYDGKSVQKITKSRAPC 
BADN01032869.1  1383 ggGTGAGTA  Intron 2   CAGaaaggcggtggatgcaaaaacgct 
                     aa<0-----[1389 : 2613]-0>ttactaacaagactaatcaggccg 
                     tc                       cgctcgtatcgagaggccactaat 


SPP00000657_2.0   93 VIL                                               
                     VI+                                               
                     VIM                                               
BADN01032869.1  2686 gaa                                               
                     ttt                                               
                     ccg                                               


//
Making a S in phase 1 intron
>BADN01032869.1.pep
GYEPRYQELARVVKGEFPDAAVSGFVGRKSSFEIEINGQLVFSKFETGGFPYEDDIMNAV
QDAYDGKSVQKITKSRAPCVIM
//
>BADN01032869.1.[1051:2694].sp
GGATACGAACCCCGCTATCAGGAGCTCGCCCGGGTTGTTAAGGGTGAGTTTCCCGATGCG
GCTGTGTCAGGCTTCGTGGGAAGAAAAAGCAGCTTTGAGATCGAAATCAATGGGCAGCTT
GTCTTCTCCAAGTTTGAGACTGGTGGCTTCCCATATGAGGATGACATCATGAACGCTGTC
CAGGATGCATATGACGGGAAATCGGTACAGAAGATCACCAAAAGCCGTGCACCATGTGTC
ATCATG
//
BADN01032869.1	GeneWise	match	1051	2694	123.35	+	.	BADN01032869.1-genewise-prediction-1
BADN01032869.1	GeneWise	cds	1051	1138	0.00	+	0	BADN01032869.1-genewise-prediction-1
BADN01032869.1	GeneWise	intron	1139	1311	0.00	+	.	BADN01032869.1-genewise-prediction-1
BADN01032869.1	GeneWise	cds	1312	1388	0.00	+	2	BADN01032869.1-genewise-prediction-1
BADN01032869.1	GeneWise	intron	1389	2613	0.00	+	.	BADN01032869.1-genewise-prediction-1
BADN01032869.1	GeneWise	cds	2614	2694	0.00	+	0	BADN01032869.1-genewise-prediction-1
//

genewise output
Score 11.27 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000657_2.0   45 FEIEINGQLI                                        
                     F+I +N  +I                                        
                     FDIGVNNYMI                                        
BADN01032869.1 -3683 tgaggaataa                                        
                     tatgtaaatt                                        
                     tccaactcgt                                        


//
>BADN01032869.1.pep
FDIGVNNYMI
//
>BADN01032869.1.[3683:3652].sp
TTTGACATCGGAGTAAACAATTACATGATT
//
BADN01032869.1	GeneWise	match	3683	3654	11.27	-	.	BADN01032869.1-genewise-prediction-1
BADN01032869.1	GeneWise	cds	3683	3654	0.00	-	0	BADN01032869.1-genewise-prediction-1
//