TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000654_2.0 # Protein # Selenoprotein U (SelU) # Zebrafish (Danio rerio) (253 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01045673.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 105 6e-27 BADN01076486.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 92 7e-20 BADN01045674.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 65 5e-17 BADN01036881.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 69 7e-15 BADN01036882.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 44 8e-04 BADN01045672.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 44 0.002 >BADN01045673.1 Thunnus orientalis DNA, contig: superscaffoldBa00001283_0008, whole genome shotgun sequence Length = 6570 Score = 105 bits (263), Expect(2) = 6e-27, Method: Compositional matrix adjust. Identities = 60/132 (45%), Positives = 77/132 (58%), Gaps = 30/132 (22%) Frame = +2 Query: 91 EVSDLSSLKAQLDECGVCLYAVVKENVGSEIQLFRLYFSGEIFLDQQ------------- 137 E ++LSSLK+QL + V L+AVVKEN+G E+ F+ YF+G I++DQQ Sbjct: 407 EAAELSSLKSQLQDLEVPLFAVVKENLGKELDCFKKYFTGRIYVDQQVSYTWFHSYTAKN 586 Query: 138 -----------------RGFFGPLERWMGVSGILRGGVWMNGWRAYQSGYWGNVKGEGFV 180 R F+GP RWM +S LR GVW N WRAY+ G+ GN+KGEG V Sbjct: 587 VGLHDSNQ*AAFMFSS*RNFYGPQVRWMCLSMFLRVGVWRNLWRAYRRGFRGNLKGEGLV 766 Query: 181 LGAVYVIGPQQQ 192 LG V+VIGP Q Sbjct: 767 LGGVFVIGPGDQ 802 Score = 37.4 bits (85), Expect(2) = 6e-27, Method: Compositional matrix adjust. Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +3 Query: 192 QGILLEHREMEFGDKVQKSDVLQAVEQIK 220 QGILLEHRE EFGDKV VL+ +++ Sbjct: 888 QGILLEHREKEFGDKVNMLAVLRTARKMR 974 Score = 63.2 bits (152), Expect(2) = 3e-20, Method: Compositional matrix adjust. Identities = 28/47 (59%), Positives = 40/47 (85%) Frame = +2 Query: 91 EVSDLSSLKAQLDECGVCLYAVVKENVGSEIQLFRLYFSGEIFLDQQ 137 E S+LSSLK QL+E GV L AVVKEN+G+EI+ FR +F+G+I++D++ Sbjct: 6002 EASELSSLKPQLEELGVPLVAVVKENIGTEIEDFRPHFAGDIYIDEE 6142 Score = 56.6 bits (135), Expect(2) = 3e-20, Method: Compositional matrix adjust. Identities = 24/39 (61%), Positives = 32/39 (82%) Frame = +3 Query: 58 SADDRVFKARELWESSGAVIMAVRRPGXFMCREEVSDLS 96 SAD +V KA+ LWE +GAV+MAVRRPG F+CRE ++ +S Sbjct: 5802 SADGKVIKAKSLWERNGAVVMAVRRPG*FLCREVIAHIS 5918 >BADN01076486.1 Thunnus orientalis DNA, contig: superscaffoldBa00003166_0010, whole genome shotgun sequence Length = 5276 Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/132 (42%), Positives = 69/132 (52%), Gaps = 35/132 (26%) Frame = +3 Query: 129 SGEIFLDQQRGFFGPLERWMGVSGILRGGVWMNGWRAYQSGYWGNVKGEGFVLGAVYVIG 188 S L QR F+GP ER MG+ LR GVW+NG RA+++G+ GNV GEGFVLG V+VIG Sbjct: 3642 SASCLLVFQRRFYGPRERKMGLLAFLRVGVWLNGLRAFKNGFMGNVLGEGFVLGGVFVIG 3821 Query: 189 PQQQ-----------------------------------GILLEHREMEFGDKVQKSDVL 213 QQ GILLEHRE+EFGDKV DV+ Sbjct: 3822 RGQQVKIINITQSFV**HYKTCQRGIKAAHLKHCFIIF*GILLEHREIEFGDKVNIEDVI 4001 Query: 214 QAVEQIKTQQLS 225 +A +I + L Sbjct: 4002 RAARRIPQELLP 4037 Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/54 (62%), Positives = 44/54 (81%) Frame = +2 Query: 87 MCREEVSDLSSLKAQLDECGVCLYAVVKENVGSEIQLFRLYFSGEIFLDQQRGF 140 +C +E ++LSSLK QLDE GV LYAVVKE+VG+E+Q FR YF GE+FLD++ F Sbjct: 3329 LCLQEAAELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPYFKGEVFLDEKVHF 3490 Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/29 (72%), Positives = 23/29 (79%) Frame = +1 Query: 62 RVFKARELWESSGAVIMAVRRPGXFMCRE 90 + K R LWE SGAVIMAVRRPG F+CRE Sbjct: 2362 KTLKGRTLWEKSGAVIMAVRRPG*FLCRE 2448 >BADN01045674.1 Thunnus orientalis DNA, contig: superscaffoldBa00001283_0009, whole genome shotgun sequence Length = 2242 Score = 65.5 bits (158), Expect(2) = 5e-17, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 42/56 (75%) Frame = +1 Query: 137 QRGFFGPLERWMGVSGILRGGVWMNGWRAYQSGYWGNVKGEGFVLGAVYVIGPQQQ 192 Q+ F+GPL+R MG G +R GVW N RA++SGY GN+ GEGF+LG V+VIGP Q Sbjct: 37 QKRFYGPLQRKMGGLGFIRLGVWQNFMRAWRSGYQGNMNGEGFILGGVFVIGPGDQ 204 Score = 43.9 bits (102), Expect(2) = 5e-17, Method: Compositional matrix adjust. Identities = 20/28 (71%), Positives = 26/28 (92%) Frame = +2 Query: 192 QGILLEHREMEFGDKVQKSDVLQAVEQI 219 QGILLEHRE EFG+KV+ +DVL+AV++I Sbjct: 296 QGILLEHREKEFGNKVEIADVLEAVKKI 379 >BADN01036881.1 Thunnus orientalis DNA, contig: superscaffoldBa00000911_0003, whole genome shotgun sequence Length = 3263 Score = 63.5 bits (153), Expect(2) = 7e-15, Method: Compositional matrix adjust. Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Frame = -1 Query: 126 LYFSGEIFLDQQRGFFGPLERWMGVS-GILRGGVWMNGWRAYQSGYWGNVKGEGFVLGAV 184 LYF FL+ QR F+G +R MG++ G++R GV N + GY GNV GEGF+LG + Sbjct: 2651 LYFISCSFLNLQRVFYGRAQRRMGLALGLVRLGVLRNLVNVKKKGYQGNVHGEGFILGGL 2472 Query: 185 YVIGPQQQGI 194 YVIGP++Q I Sbjct: 2471 YVIGPEKQVI 2442 Score = 38.5 bits (88), Expect(2) = 7e-15, Method: Compositional matrix adjust. Identities = 16/28 (57%), Positives = 22/28 (78%) Frame = -2 Query: 226 GILLEHHEKEFGDKADLSAVRKAVSMIN 253 G++LEH EKEFGDKA +S++ +A IN Sbjct: 2350 GVILEHKEKEFGDKAHISSILEAAKKIN 2267 Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/52 (59%), Positives = 42/52 (80%) Frame = -2 Query: 86 FMCREEVSDLSSLKAQLDECGVCLYAVVKENVGSEIQLFRLYFSGEIFLDQQ 137 F+ +E ++LSSLK QLDE GV LYAVVKE++ +EIQ +R YF+GEIF+D + Sbjct: 2866 FLFLQEAAELSSLKPQLDELGVPLYAVVKEDIDTEIQSYRPYFNGEIFVDHK 2711 >BADN01036882.1 Thunnus orientalis DNA, contig: superscaffoldBa00000911_0004, whole genome shotgun sequence Length = 1787 Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 24/33 (72%) Frame = -1 Query: 58 SADDRVFKARELWESSGAVIMAVRRPGXFMCRE 90 SAD + K + LWE +GAVI+ VRRPG +CRE Sbjct: 1226 SADGKTVKGQTLWERNGAVILVVRRPG*SLCRE 1128 >BADN01045672.1 Thunnus orientalis DNA, contig: superscaffoldBa00001283_0007, whole genome shotgun sequence Length = 16955 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 25/35 (71%) Frame = +2 Query: 58 SADDRVFKARELWESSGAVIMAVRRPGXFMCREEV 92 S +R KA+ LWE +GAV+M VRRPG +CRE + Sbjct: 16517 SVHER-HKAKTLWEKTGAVVMVVRRPG*LLCREVI 16618 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.321 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 165,273,324 Number of extensions: 2109131 Number of successful extensions: 8248 Number of sequences better than 1.0e-02: 6 Number of HSP's gapped: 8241 Number of HSP's successfully gapped: 16 Length of query: 253 Length of database: 228,165,821 Length adjustment: 118 Effective length of query: 135 Effective length of database: 212,464,505 Effective search space: 28682708175 Effective search space used: 28682708175 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 42 (20.8 bits)