genewise output
Score 44.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000654_2.0    1 MELVTRAVGSVGLTVIEALRSFTELFLTQPVCATLTQLADTDLRTLDG  
                     M  VT  + +VGL V E + SFT+ F T P  A    L DT+L+T  G  
                     MVTVTTVLKAVGLFVAELISSFTDWFQTTPAWANQEVLEDTELKTTGG  
BADN01045672.1 15550 agagaagcagggctgggcaattagttcaacgtgacggcggagcaaagg  
                     ttctccttactgtttcattgctcagtaccccgcaaattaacataccgg  
                     ggtgcgcgggacgttagcccccacgcgcaaagccaagggcaaggccac  


SPP00000654_2.0   49                           CVCVCVCVSADDRVFKARELWES 
                                                              KA+ LWE  
                               V:I[atc]        -----------HERHKAKTLWEK 
BADN01045672.1 15694 AGTGAGTC  Intron 1   CAGTC           cgccagaactga 
                      <1-----[15695:16520]-1>             aagaacactgaa 
                                                          tgacgcatgggg 


SPP00000654_2.0   73 SGAVIMAVRRPG                                      
                     +GAV+M VRRPG                                      
                     TGAVVMVVRRPG                                      
BADN01045672.1 16559 aggggaggcccg                                      
                     cgctttttggcg                                      
                     catgcgtagata                                      


//
Making a I in phase 1 intron
>BADN01045672.1.pep
MVTVTTVLKAVGLFVAELISSFTDWFQTTPAWANQEVLEDTELKTTGGIHERHKAKTLWE
KTGAVVMVVRRPG
//
>BADN01045672.1.[15550:16594].sp
ATGGTGACTGTGACCACGGTCCTGAAGGCGGTAGGCCTGTTTGTTGCAGAGCTCATCAGC
TCCTTCACAGACTGGTTCCAGACCACACCAGCATGGGCCAACCAAGAAGTGCTGGAGGAC
ACAGAACTGAAGACCACCGGAGGCATCCATGAGCGACACAAGGCCAAAACTCTGTGGGAG
AAGACCGGAGCTGTGGTCATGGTTGTACGGCGACCTGGA
//
BADN01045672.1	GeneWise	match	15550	16594	54.70	+	.	BADN01045672.1-genewise-prediction-1
BADN01045672.1	GeneWise	cds	15550	15694	0.00	+	0	BADN01045672.1-genewise-prediction-1
BADN01045672.1	GeneWise	intron	15695	16520	0.00	+	.	BADN01045672.1-genewise-prediction-1
BADN01045672.1	GeneWise	cds	16521	16594	0.00	+	2	BADN01045672.1-genewise-prediction-1
//

genewise output
Score 23.96 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000654_2.0   49 VCVCVCVCVSADDRVFKA                                
                     VCVC+C C+ +   +++A                                
                     VCVCLCACLCSLSHIYRA                                
BADN01045672.1 -6667 gtgtttgttttcacatag                                
                     tgtgtgcgtgctgatagc                                
                     gtgtgcgtgcttctatgc                                


//
>BADN01045672.1.pep
VCVCLCACLCSLSHIYRA
//
>BADN01045672.1.[6667:6612].sp
GTGTGTGTGTGTTTGTGCGCGTGTTTGTGCTCTCTTAGCCATATATATAGGGCC
//
BADN01045672.1	GeneWise	match	6667	6614	23.96	-	.	BADN01045672.1-genewise-prediction-1
BADN01045672.1	GeneWise	cds	6667	6614	0.00	-	0	BADN01045672.1-genewise-prediction-1
//