genewise output
Score 20.16 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

tr|E7F3K0|E7F3K   74 YLPLPLYRHIASFLSMF                                 
                     +L LPL+ H+ S+ SM+                                 
                     FLLLPLWPHLLSLCSMY                                 
BADN01025730.1   125 tttccctcctctctaat                                 
                     ttttctgcattctggta                                 
                     cggctggacgttactgt                                 


//
>BADN01025730.1.pep
FLLLPLWPHLLSLCSMY
//
>BADN01025730.1.[125:175].sp
TTCTTGTTGCTCCCTCTGTGGCCACACTTGCTTTCTCTATGCAGTATGTAT
//
BADN01025730.1	GeneWise	match	125	175	20.16	+	.	BADN01025730.1-genewise-prediction-1
BADN01025730.1	GeneWise	cds	125	175	0.00	+	0	BADN01025730.1-genewise-prediction-1
//

genewise output
Score 187.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

tr|E7F3K0|E7F3K    1 MRWLPFSALLL--WALCLHSASADNNGVKKMKMQFATGPLLKFQI     
                     M+WL FS L L   +LC    S D++GVKKMKMQFATGPLLKFQI     
                     MKWLRFSLLALGVFSLCC-ATSGDSSGVKKMKMQFATGPLLKFQI     
BADN01025730.1 -5399 aattcttccgtggttctt gatggaaggaaaaactgagcccatca     
                     tagtgtcttctgttctgg cccgagggtaatatatccgcttatat     
                     ggggttgccaggtcggcc caatccccgggggggtggattcgtat     


tr|E7F3K0|E7F3K   44                           VSGGYKRVFEEYTQALYQRYPDI 
                                               +S GYKRVFEEYTQALYQRYPDI 
                                C:C[tgc]       ISXGYKRVFEEYTQALYQRYPDI 
BADN01025730.1 -5267 TGGTGAGCA  Intron 1   CAGCattgtacgtggtacgttcctcga 
                       <2-----[5265 : 4117]-2> tcggaagttaaacactaagacat 
                                               tcagcgggtggcggcgcggcacc 


tr|E7F3K0|E7F3K   68 RIEGENYLPLPLY                          HIASFLSMFK 
                     RIEGENYLP+PLY                          HIASFLS+FK 
                     RIEGENYLPIPLY           R:R[cga]       HIASFLSVFK 
BADN01025730.1 -4046 cagggatccacctCGGTAAGAG  Intron 2   CAGAcagttctgta 
                     gtagaaatctcta  <2-----[4005 : 1140]-2> atccttctta 
                     ccaggctttccct                          cttccgtgca 


tr|E7F3K0|E7F3K   92 LLLIGVIILGKDPFALCGMQAPGIWVWSQENKI                 
                     LL+IG+II+G+DPF L GMQAPGIW W Q NK+                 
                     LLVIGLIIIGRDPFTLFGMQAPGIWEWGQGNKV                 
BADN01025730.1 -1108 ccgagcaaagagctactgacgcgatgtgcgaag                 
                     ttttgttttggactcttgtaccgtgaggagaat                 
                     gggtggttccgcacccctgacgccgggcgatga                 


//
Making a C in phase 2 intron
Making a R in phase 2 intron
>BADN01025730.1.pep
MKWLRFSLLALGVFSLCCATSGDSSGVKKMKMQFATGPLLKFQICISXGYKRVFEEYTQA
LYQRYPDIRIEGENYLPIPLYRHIASFLSVFKLLVIGLIIIGRDPFTLFGMQAPGIWEWG
QGNKV
//
>BADN01025730.1.[5399:1008].sp
ATGAAGTGGTTGCGTTTTTCGCTCCTCGCATTGGGGGTTTTCTCGCTGTGCTGCGCCACA
TCAGGTGACAGCAGCGGCGTGAAGAAGATGAAGATGCAGTTTGCGACGGGACCTCTTCTC
AAGTTTCAAATTTGCATTTCCTGAGGGTACAAGCGGGTGTTTGAGGAGTACACGCAGGCC
TTGTACCAGCGGTACCCAGACATCCGCATCGAAGGGGAGAACTATCTTCCTATCCCCCTC
TATCGACACATTGCTTCCTTCCTGTCTGTGTTCAAACTGCTGGTGATTGGGCTGATTATT
ATCGGCAGGGACCCATTCACCCTCTTCGGTATGCAAGCCCCGGGCATCTGGGAGTGGGGC
CAGGGAAATAAGGTA
//
BADN01025730.1	GeneWise	match	5399	1010	188.98	-	.	BADN01025730.1-genewise-prediction-1
BADN01025730.1	GeneWise	cds	5399	5266	0.00	-	0	BADN01025730.1-genewise-prediction-1
BADN01025730.1	GeneWise	intron	5265	4117	0.00	-	.	BADN01025730.1-genewise-prediction-1
BADN01025730.1	GeneWise	cds	4116	4006	0.00	-	1	BADN01025730.1-genewise-prediction-1
BADN01025730.1	GeneWise	intron	4005	1140	0.00	-	.	BADN01025730.1-genewise-prediction-1
BADN01025730.1	GeneWise	cds	1139	1010	0.00	-	1	BADN01025730.1-genewise-prediction-1
//