genewise output
Score 16.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000648_2.0   25 QPSVTAFMSEYGWYLL                                  
                     QP +T F+S  GW LL                                  
                     QPHLTIFIS--GWSLL                                  
BADN01048450.1 10043 ccccaataa  gtatc                                  
                     acatctttg  gggtt                                  
                     aatccccct  agtgt                                  


//
>BADN01048450.1.pep
QPHLTIFISGWSLL
//
>BADN01048450.1.[10043:10084].sp
CAACCACATCTCACCATCTTCATCAGTGGATGGAGTTTGCTT
//
BADN01048450.1	GeneWise	match	10043	10084	17.60	+	.	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	cds	10043	10084	0.00	+	0	BADN01048450.1-genewise-prediction-1
//

genewise output
Score 119.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000648_2.0    2 EAEDGARVRNEDVPPQNQDLSFLQPS                        
                     + +DG   + E  P +NQDL+FL  S                        
                     DVDDGDLPQVEKAPVKNQDLTFLSLS          V:A[gca]      
BADN01048450.1 -4521 ggggggtccggagcgaacgcatcactGGTAAGTT  Intron 1      
                     ataagatcataacctaaaatcttgtc <1-----[4442 : 3391]   
                     tatctcgtgggggccacgtgtcccgt                        


SPP00000648_2.0   28      TAFMSEYGWYLLFGCVGVYLLIQHLRKSRSSTQTRSSSGSAEA  
                            ++SEYGWYLL   V VYL+IQHL K RSS   RS         
                          GNLLSEYGWYLLAVTVLVYLIIQHLSKRRSSQNPRSPLPQTPQ  
BADN01048450.1 -3393 CAGCAgacctgtgttccggagcgtcaacccaaaatacaccaccccacc  
                     -1>  gattcaaggattctctttatttaatgaggcgaacggctcacca  
                          attgtgtagcggtgtggccgccgcgcgaaccgccccacaaaaa  


SPP00000648_2.0   72                           DVGSVVRRQEALEASRRRMQEEQ 
                                                V  V RRQEA+EA+RR+MQEE  
                               H:D[gat]        AV-LVARRQEAMEAARRKMQEEL 
BADN01048450.1 -3259 GGTCAGCA  Intron 2   AAGATgg tggaacggagggcaaacggc 
                      <1-----[3258 : 1701]-1>  ct ttcggaactaccggataaat 
                                               cg agaaaaacgaatgaggaggg 


SPP00000648_2.0   96 DARAAEFREKQRM                       LEEEKRRQKIEMW 
                     DA+AA FREKQ +                        E+EKRRQKIE+W 
                     DAKAALFREKQTQ                       QEQEKRRQKIEIW 
BADN01048450.1 -1632 ggaggctagacacGTGCAGT  Intron 3   CAGcgcgaaacaagat 
                     acaccttgaaaca<0-----[1593 : 1500]-0>aaaaaggaatatg 
                     ccgacccagggag                       aaagggggacgag 


SPP00000648_2.0  122 DSMQEGKSYKGSAKVAQ                       QNTEEAASS 
                     +SMQ+GKSYKG+ KV+Q                          E ++S+ 
                     ESMQQGKSYKGATKVSQ                       TTEEASSST 
BADN01048450.1 -1460 gaaccgaataggaagtcGTGAGTT  Intron 4   CAGaagggatta 
                     agtaagagaagccatca<0-----[1409 :  497]-0>ccaacgccc 
                     gtgagagtcaacaactg                       ctagctaaa 


SPP00000648_2.0  148 SSLRPKTEKKPLRSSG                                  
                     + L+PK  KKPLRS+G                                  
                     AVLKPKNNKKPLRSAG                                  
BADN01048450.1  -469 ggcacaaaaacccagg                                  
                     cttacaaaaactggcg                                  
                     tggaagccagatcttt                                  


//
Making a A in phase 1 intron
Making a D in phase 1 intron
>BADN01048450.1.pep
DVDDGDLPQVEKAPVKNQDLTFLSLSAGNLLSEYGWYLLAVTVLVYLIIQHLSKRRSSQN
PRSPLPQTPQDAVLVARRQEAMEAARRKMQEELDAKAALFREKQTQQEQEKRRQKIEIWE
SMQQGKSYKGATKVSQTTEEASSSTAVLKPKNNKKPLRSAG
//
>BADN01048450.1.[4521:420].sp
GATGTAGATGACGGTGACTTGCCTCAGGTGGAGAAGGCGCCCGTCAAAAACCAGGATCTG
ACTTTCCTCAGCCTGTCTGCAGGAAATCTTCTGTCTGAGTATGGATGGTACCTGCTGGCT
GTGACTGTGCTGGTCTACCTGATCATCCAGCACCTGAGCAAGAGAAGATCCAGCCAGAAC
CCCCGCAGCCCACTCCCACAAACACCACAAGATGCCGTGTTAGTGGCAAGAAGACAAGAA
GCCATGGAAGCAGCTCGGAGAAAGATGCAAGAGGAGCTGGACGCCAAGGCAGCCCTCTTC
AGAGAGAAGCAGACACAGCAAGAACAAGAGAAGAGGAGGCAGAAAATCGAGATATGGGAG
AGTATGCAACAGGGAAAGAGTTACAAAGGAGCCACAAAAGTCTCTCAGACCACTGAAGAG
GCCAGTTCATCAACAGCTGTGCTGAAACCAAAGAACAACAAAAAGCCACTTCGCAGTGCT
GGT
//
BADN01048450.1	GeneWise	match	4521	422	119.45	-	.	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	cds	4521	4443	0.00	-	0	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	intron	4442	3391	0.00	-	.	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	cds	3390	3259	0.00	-	2	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	intron	3258	1701	0.00	-	.	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	cds	1700	1594	0.00	-	2	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	intron	1593	1500	0.00	-	.	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	cds	1499	1410	0.00	-	0	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	intron	1409	497	0.00	-	.	BADN01048450.1-genewise-prediction-1
BADN01048450.1	GeneWise	cds	496	422	0.00	-	0	BADN01048450.1-genewise-prediction-1
//