genewise output
Score 14.03 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000644_2.0   43 WPAFT                                             
                     WP FT                                             
                     WPTFT                                             
BADN01040629.1 17581 tcata                                             
                     gcctc                                             
                     gaaca                                             


//
>BADN01040629.1.pep
WPTFT
//
>BADN01040629.1.[17581:17595].sp
TGGCCAACATTCACA
//
BADN01040629.1	GeneWise	match	17581	17595	14.03	+	.	BADN01040629.1-genewise-prediction-1
BADN01040629.1	GeneWise	cds	17581	17595	0.00	+	0	BADN01040629.1-genewise-prediction-1
//

genewise output
Score 182.44 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000644_2.0    1 MSFCSFFGKEFYKDHFKP                          IYACS 
                     MSFC F G E+YKDHFKP                          +Y CS 
                     MSFCQFVGGEIYKDHFKP          G:G[ggt]        MYVCS 
BADN01040629.1-14817 atttctggggatagctacGGTGAGCT  Intron 1   CAGGTatgtt 
                     tctgattggataaaatac <1-----[14762:13515]-1>  tatgc 
                     gtttgttctgccgttcaa                          gtacc 


SPP00000644_2.0   25 QCGHPLFSSRSKYEHSSPWPAFTETIREDSVTKMMETLTAYK        
                     +C HPLFSSRSK+ HSSPWPAFT TIREDSVTKMMETLTA+K        
                     KCNHPLFSSRSKFAHSSPWPAFTNTIREDSVTKMMETLTAFK        
BADN01040629.1-13497 atacccttactatgcttctcgtaaaaaggagaaaagacagta        
                     agaacttcggcatcacccgcctcactgaagtcattactccta        
                     gtctagcctccgcccgtcgtttccccagccccggggtcctcg        


SPP00000644_2.0   67                        VLCGKCGNGLGHEFLNDGPEEGLSRF 
                                            VLCGKCGNGLGHEF+NDGPEEG+SRF 
                                            VLCGKCGNGLGHEFVNDGPEEGVSRF 
BADN01040629.1-13371 GTCAGAG  Intron 2   CAGgctgatgagcgcgtgaggcggggtct 
                     <0-----[13371:13242]-0>ttggaggagtgaattaagcaagtcgt 
                                            tttcgccctgtcgtgtccaagagatt 


SPP00000644_2.0   93 XIFSHSLKFVP                                       
                     XIFSHSLKFVP                                       
                     XIFSHSLKFVP                                       
BADN01040629.1-13163 tatactcatgc                                       
                     gttgactattc                                       
                     aactcgcgtcc                                       


//
Making a G in phase 1 intron
>BADN01040629.1.pep
MSFCQFVGGEIYKDHFKPGMYVCSKCNHPLFSSRSKFAHSSPWPAFTNTIREDSVTKMME
TLTAFKVLCGKCGNGLGHEFVNDGPEEGVSRFXIFSHSLKFVP
//
>BADN01040629.1.[14817:13129].sp
ATGTCTTTTTGTCAGTTTGTTGGCGGTGAGATCTACAAGGATCATTTCAAACCAGGTATG
TATGTATGCTCCAAGTGTAACCATCCACTGTTCTCCAGTCGCTCCAAGTTCGCCCACTCG
TCTCCCTGGCCTGCTTTTACCAACACCATCAGAGAGGACAGCGTCACCAAGATGATGGAG
ACTCTCACCGCTTTCAAGGTTCTTTGTGGCAAGTGCGGCAACGGTCTGGGTCACGAGTTT
GTGAATGACGGCCCAGAAGAGGGAGTGTCACGTTTTTGAATATTCAGTCACTCGCTCAAG
TTTGTCCCC
//
BADN01040629.1	GeneWise	match	14817	13131	182.44	-	.	BADN01040629.1-genewise-prediction-1
BADN01040629.1	GeneWise	cds	14817	14763	0.00	-	0	BADN01040629.1-genewise-prediction-1
BADN01040629.1	GeneWise	intron	14762	13515	0.00	-	.	BADN01040629.1-genewise-prediction-1
BADN01040629.1	GeneWise	cds	13514	13372	0.00	-	2	BADN01040629.1-genewise-prediction-1
BADN01040629.1	GeneWise	intron	13371	13242	0.00	-	.	BADN01040629.1-genewise-prediction-1
BADN01040629.1	GeneWise	cds	13241	13131	0.00	-	0	BADN01040629.1-genewise-prediction-1
//