genewise output Score 285.15 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000646_2.0 1 MSRFLVRLSTVVSKGATGKSVLPQKRIFAGIRLISSST MSRF RL VVS+ AT +SV+ +RI A IR +S+S MSRFAARLFLVVSQHATARSVVLPRRIPAFIRPVSTSQ BADN01055509.1 9445 atctggccttggtccgagatggtcaaacgtaccgtaac tcgtccgtttttcaacccgctttcggtccttgctccga gtcccttccatttgctacacggagggcaaccttaccta SPP00000646_2.0 39 LQSLTRYDQSTDWQRKLSPEQYV LQSLTRY+Q+T+WQ+KLSPEQYV G:G[ggc] LQSLTRYNQTTNWQKKLSPEQYV BADN01055509.1 9559 GGTATAAG Intron 1 CAGGCcctcactacaaatcaactcgctg <1-----[9560 :10089]-1> tactcgaaaccagaaatccaaat gatcctttgtacgagaccaggta SPP00000646_2.0 63 VTREKGTEV PFSGIYLNHNEVGMYHC VTREKGTE PFSGIYLNH E+GMYHC VTREKGTEE PFSGIYLNHYEMGMYHC BADN01055509.1 10161 gaagagaggGTGAGTA Intron 2 CAGctagatcactgagatct tcgaagcaa<0-----[10188:10916]-0>ctggtataaaatgtaag ccagggtgg cttgccgcccagagcct SPP00000646_2.0 89 VCCDSPLF SEAKYDAGAGWPSFC VCCD+PLF SEAKYD+G GWP+F VCCDTPLF S:S[agt] SEAKYDSGTGWPAFK BADN01055509.1 10968 gttgacctAGGTAACAG Intron 3 TAGTtggatgtgagtcgta tggacctt <2-----[10994:11316]-2> cacaaacgcggccta cttctgtc agtgtcagacgatca SPP00000646_2.0 113 EAHGTWEKDESHANIVRRPDNSLGSTGTEVICKH EAHGTWE+DESH +I+RRPDNSLGS GTEV+CK+ EAHGTWERDESHTSIIRRPDNSLGSAGTEVLCKN BADN01055509.1 11363 ggcgatgcggacataacccgaacgaggaggctaa acagcgagaagaccttggcaagtggcgcattgaa gttgagggcacccccttctccctgttgagcttat SPP00000646_2.0 147 CDAHLGHVFEDGPDPTGQRFCINSVA CD+HLGHVF+DGPDPTGQRFCINSVA CDSHLGHVFDDGPDPTGQRFCINSVA BADN01055509.1 11465 GTGAGTT Intron 4 CAGtgtccgcgtgggcgcagccttaaagg <0-----[11465:11619]-0>gacatgattaagcaccgagtgtagtc ttccgttgtttaacaatggctccctc SPP00000646_2.0 173 LNFKPRE L FKPRE LTFKPRE BADN01055509.1 11698 catacag tctacga cgtacaa // Making a G in phase 1 intron Making a S in phase 2 intron >BADN01055509.1.pep MSRFAARLFLVVSQHATARSVVLPRRIPAFIRPVSTSQGLQSLTRYNQTTNWQKKLSPEQ YVVTREKGTEEPFSGIYLNHYEMGMYHCVCCDTPLFSSEAKYDSGTGWPAFKEAHGTWER DESHTSIIRRPDNSLGSAGTEVLCKNCDSHLGHVFDDGPDPTGQRFCINSVALTFKPRE // >BADN01055509.1.[9445:11718].sp ATGTCTCGCTTCGCCGCTCGTCTCTTCTTAGTTGTTTCTCAGCACGCTACAGCCAGATCC GTGGTGTTACCGAGGAGGATCCCAGCATTCATCCGTCCTGTATCCACCAGTCAAGGCCTG CAATCTCTCACCCGTTATAATCAGACTACAAACTGGCAAAAGAAACTCTCCCCAGAGCAG TATGTAGTCACCAGAGAGAAGGGGACTGAGGAGCCCTTTAGTGGGATCTACCTGAACCAC TACGAAATGGGAATGTACCACTGTGTCTGTTGTGACACTCCGCTTTTCAGTTCAGAGGCT AAGTATGACTCAGGGACAGGCTGGCCAGCTTTCAAAGAGGCTCATGGGACATGGGAGCGG GACGAAAGCCACACCTCCATCATTCGTCGCCCTGACAACAGCCTTGGGAGTGCTGGGACA GAGGTCCTTTGTAAAAATTGTGATTCCCACCTGGGTCATGTGTTTGATGATGGACCAGAC CCAACAGGTCAGCGGTTCTGTATCAACAGCGTTGCCCTCACGTTTAAACCCAGAGAA // BADN01055509.1 GeneWise match 9445 11718 285.15 + . BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise cds 9445 9559 0.00 + 0 BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise intron 9560 10089 0.00 + . BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise cds 10090 10187 0.00 + 2 BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise intron 10188 10916 0.00 + . BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise cds 10917 10993 0.00 + 0 BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise intron 10994 11316 0.00 + . BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise cds 11317 11464 0.00 + 1 BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise intron 11465 11619 0.00 + . BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise cds 11620 11718 0.00 + 0 BADN01055509.1-genewise-prediction-1 // genewise output Score 15.36 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000646_2.0 138 TGTEVICKHCDA TGT++ C+ C A TGTDIDCQACVA BADN01055509.1 -4406 agagagtcgtgg cgcatagacgtc tcacttcaattg // >BADN01055509.1.pep TGTDIDCQACVA // >BADN01055509.1.[4406:4369].sp ACTGGCACAGACATTGATTGCCAAGCATGTGTTGCG // BADN01055509.1 GeneWise match 4406 4371 15.36 - . BADN01055509.1-genewise-prediction-1 BADN01055509.1 GeneWise cds 4406 4371 0.00 - 0 BADN01055509.1-genewise-prediction-1 //