genewise output
Score 162.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

tr|E9QHL7|E9QHL    1 MSFCSFSGGEIYKDHFES                          MYVCA 
                     MS+CSFSGGE YK+HF                            +YVC+ 
                     MSYCSFSGGEEYKNHFHP          G:G[ggt]        IYVCS 
BADN01013935.1  2405 attttttggggtaactccGGTGAGTG  Intron 1   CAGGTatgtt 
                     tcagctcggaaaaaatac <1-----[2460 : 3195]-1>  tatgc 
                     gatctcttaaacatcctt                          acgtt 


tr|E9QHL7|E9QHL   25 QCGYELFSSRSKYEHSSPWPAFTETIHEDSVSKQEERWGAYK        
                     +CG++LFSS SK+EHSSPWPAF+ETIH+DSVSK  E WG  K        
                     ECGHKLFSSLSKFEHSSPWPAFSETIHKDSVSKHPEAWGPIK        
BADN01013935.1  3213 gtgcatttattatgcttctcgttgaacagagtaccggtgcaa        
                     aggaattcgtcataacccgcctcactaaagtcaacacggcta        
                     atgtggcccgagcgctttggtcagtttgccccactaagacag        


tr|E9QHL7|E9QHL   67                        VRCGKCGNGLGHEFVNDGPKHGLSRF 
                                            V CGKCGNGLGHEF+NDGP+ GLSRF 
                                            VCCGKCGNGLGHEFLNDGPREGLSRF 
BADN01013935.1  3339 GTAAATT  Intron 2   CAGgttgatgagcgcgttaggcaggctct 
                     <0-----[3339 : 3493]-0>tgggaggagtgaattaagcgagtcgt 
                                            tttggtttagccgcgtcaaaaggacc 


tr|E9QHL7|E9QHL   93 CIFSSSLKFIPK                                      
                      IFSSSL FIPK                                      
                     XIFSSSLTFIPK                                      
BADN01013935.1  3572 tataatcataca                                      
                     gttggctcttca                                      
                     aacctaggcata                                      


//
Making a G in phase 1 intron
>BADN01013935.1.pep
MSYCSFSGGEEYKNHFHPGIYVCSECGHKLFSSLSKFEHSSPWPAFSETIHKDSVSKHPE
AWGPIKVCCGKCGNGLGHEFLNDGPREGLSRFXIFSSSLTFIPK
//
>BADN01013935.1.[2405:3607].sp
ATGTCATATTGCTCTTTCTCTGGTGGAGAAGAATACAAAAATCACTTCCATCCTGGTATA
TACGTGTGTTCTGAATGTGGGCATAAGTTGTTCTCCAGCTTGTCAAAGTTCGAGCACTCT
TCTCCTTGGCCGGCTTTCTCAGAGACTATTCATAAGGACAGCGTCTCCAAACACCCTGAA
GCATGGGGACCCATAAAGGTTTGTTGTGGGAAGTGTGGTAATGGACTGGGCCACGAGTTC
TTGAATGACGGACCAAGAGAAGGGCTGTCACGCTTCTGAATATTCAGCAGTTCACTGACG
TTCATACCTAAA
//
BADN01013935.1	GeneWise	match	2405	3607	162.92	+	.	BADN01013935.1-genewise-prediction-1
BADN01013935.1	GeneWise	cds	2405	2459	0.00	+	0	BADN01013935.1-genewise-prediction-1
BADN01013935.1	GeneWise	intron	2460	3195	0.00	+	.	BADN01013935.1-genewise-prediction-1
BADN01013935.1	GeneWise	cds	3196	3338	0.00	+	2	BADN01013935.1-genewise-prediction-1
BADN01013935.1	GeneWise	intron	3339	3493	0.00	+	.	BADN01013935.1-genewise-prediction-1
BADN01013935.1	GeneWise	cds	3494	3607	0.00	+	0	BADN01013935.1-genewise-prediction-1
//

genewise output
Score 13.67 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

tr|E9QHL7|E9QHL   85 PKHGLSRF                                          
                     P HGL  F                                          
                     PDHGLQNF                                          
BADN01013935.1  -123 cgcgtcat                                          
                     caagtaat                                          
                     tctgaact                                          


//
>BADN01013935.1.pep
PDHGLQNF
//
>BADN01013935.1.[123:98].sp
CCTGACCATGGGTTACAAAACTTT
//
BADN01013935.1	GeneWise	match	123	100	13.67	-	.	BADN01013935.1-genewise-prediction-1
BADN01013935.1	GeneWise	cds	123	100	0.00	-	0	BADN01013935.1-genewise-prediction-1
//