TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000640_2.0 # Protein # Selenoprotein O (SelO) # Zebrafish (Danio rerio) (692 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01010694.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 273 1e-76 BADN01020657.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 176 3e-44 BADN01010693.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 99 7e-20 BADN01079896.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 76 4e-13 BADN01079895.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 52 2e-05 >BADN01010694.1 Thunnus orientalis DNA, contig: superscaffoldBa00000162_0021, whole genome shotgun sequence Length = 11082 Score = 273 bits (697), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 137/187 (73%), Positives = 145/187 (77%), Gaps = 2/187 (1%) Frame = -3 Query: 1 MASVGSRLTRFYISRPGVIARRFLAH--AGMDDMGVXXXXXXXXXXXFDNVALKKLPLDP 58 MA +G RL R I PGV R AGMD+MG FDNVALK+LPLDP Sbjct: 3814 MAYLGPRLGRCRIFLPGVSVFRLFGTGVAGMDEMGHATSRSPLERLDFDNVALKRLPLDP 3635 Query: 59 STEPGVRQVRGSCFSRVQPTPLKNPEFVAVSAPALALLGLDAEEVLKDPLGPEYLSGSKV 118 S EPGVRQV+G+CFSRV+P PL P FVAVS ALALLGL+ EEV DPLGPEYLSGS V Sbjct: 3634 SEEPGVRQVKGACFSRVKPQPLTKPRFVAVSHEALALLGLNGEEVADDPLGPEYLSGSTV 3455 Query: 119 MPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLRENPTGRWEIQVKGA 178 MPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVK P GQ PELLRENP+GRWEIQVKGA Sbjct: 3454 MPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKVPPGQDPELLRENPSGRWEIQVKGA 3275 Query: 179 GLTPYSR 185 GLTPYSR Sbjct: 3274 GLTPYSR 3254 Score = 124 bits (311), Expect(2) = 3e-53, Method: Compositional matrix adjust. Identities = 59/74 (79%), Positives = 68/74 (91%) Frame = -1 Query: 180 LTPYSRQADGRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNPRME 239 L+ RQADGRKVLRSSIREFLCSEA++ LGVPTTRAGSVVTSDS+V+RD++Y GNPR E Sbjct: 2304 LSLLHRQADGRKVLRSSIREFLCSEAMYFLGVPTTRAGSVVTSDSKVIRDVYYSGNPRNE 2125 Query: 240 RCSVVLRIAPSFIR 253 RCSVVLRIAP+F+R Sbjct: 2124 RCSVVLRIAPTFLR 2083 Score = 108 bits (270), Expect(2) = 3e-53, Method: Compositional matrix adjust. Identities = 49/61 (80%), Positives = 54/61 (88%) Frame = -2 Query: 253 RFGSFEIFKRADEFTGRQGPSYGHDELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFKE 312 RFGSFEIFKRADE+TGRQGPSYG DE+R QML+YVIE FYPEI +NYPD ERN AFF+E Sbjct: 1985 RFGSFEIFKRADEYTGRQGPSYGRDEIRGQMLDYVIEMFYPEIQQNYPDRVERNVAFFRE 1806 Query: 313 V 313 V Sbjct: 1805 V 1803 Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 79/95 (83%), Positives = 88/95 (92%) Frame = -2 Query: 356 RFDPDFICNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLPLYNDF 415 RFDPDFICNASDNSGRYSYQAQPAICRWNL +LAEAL+P+LPP RAE V++EYL LYN F Sbjct: 1151 RFDPDFICNASDNSGRYSYQAQPAICRWNLLKLAEALDPELPPARAETVMEEYLDLYNGF 972 Query: 416 YLSNMRKKLGLLRKEEPEDEMLITELMQTMHNTGA 450 YL NMRKKLGLL+K+EPEDE+LITEL+QTMHNTG Sbjct: 971 YLENMRKKLGLLKKQEPEDEILITELLQTMHNTGG 867 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/66 (69%), Positives = 50/66 (75%), Gaps = 3/66 (4%) Frame = -3 Query: 296 HRNYPDLTERNTAFFKE---VTVRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFG 352 HR + + FF V +RTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGP+G Sbjct: 1555 HRFFSQSYRKCHFFFSSCL*VMLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYG 1376 Query: 353 FMDRFD 358 FMDR D Sbjct: 1375 FMDRSD 1358 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/59 (72%), Positives = 50/59 (84%) Frame = -2 Query: 447 NTGADFTNTFRSLSQISCPTQEEAEDESETIKQATELLLHQSASLEELKAANRPSMDPR 505 + GADFTN+FRSLSQISCP + E+E E E +KQAT LLL Q ASLEELKAAN+P+MDPR Sbjct: 713 HAGADFTNSFRSLSQISCPVEGESEGEEERVKQATNLLLEQCASLEELKAANKPTMDPR 537 >BADN01020657.1 Thunnus orientalis DNA, contig: superscaffoldBa00000395_0026, whole genome shotgun sequence Length = 25279 Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 91/177 (51%), Positives = 113/177 (63%), Gaps = 27/177 (15%) Frame = +3 Query: 356 RFDPDFICNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLPLYNDF 415 RFDPDF+CNASD GRYSYQAQP++C WNLARLAEAL +L +A +LDE++P Y F Sbjct: 2649 RFDPDFVCNASDKRGRYSYQAQPSMCCWNLARLAEALGSELDAAKARAILDEFMPTYETF 2828 Query: 416 YLSNMRKKLGLLRKEEPEDEMLITELMQTMHNT--------------------------- 448 YLS MRKKLGL+RKEE ED LI++L+ MHNT Sbjct: 2829 YLSIMRKKLGLVRKEEAEDRELISDLLHLMHNTGTRSYVR*MEMSGNNIYNSIVILGFFS 3008 Query: 449 GADFTNTFRSLSQISCPTQEEAEDESETIKQATELLLHQSASLEELKAANRPSMDPR 505 GAD+TNTF LS++ P EE E E T+ +L+L Q AS+EELK AN+P+M+ R Sbjct: 3009 GADYTNTFHLLSRV--PWPEEGESERATVGPVVDLILEQCASIEELKVANKPTMENR 3173 Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/141 (62%), Positives = 104/141 (73%), Gaps = 1/141 (0%) Frame = +1 Query: 46 FDNVALKKLPLDPSTEPGVRQVRGSCFSRVQPT-PLKNPEFVAVSAPALALLGLDAEEVL 104 F+N AL +LP+D S EPG R V +CFSR++ PL P FVA+S ALALLGL ++VL Sbjct: 67 FNNTALNRLPVDDSEEPGSRTVPAACFSRIRALQPLARPTFVALSQSALALLGLRVQDVL 246 Query: 105 KDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLR 164 DPLGPEYLSGS+++PGS+PAAHCY GHQFG FAGQLGDGA YLGEV++ Sbjct: 247 SDPLGPEYLSGSRLLPGSQPAAHCYSGHQFGLFAGQLGDGAVMYLGEVESVT-------- 402 Query: 165 ENPTGRWEIQVKGAGLTPYSR 185 GRWEIQVKGAG+TPYSR Sbjct: 403 ---HGRWEIQVKGAGITPYSR 456 Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 43/47 (91%), Positives = 45/47 (95%) Frame = +1 Query: 310 FKEVTVRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDR 356 F +V VRTA+LVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDR Sbjct: 2230 FAQVMVRTAKLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDR 2370 Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/67 (67%), Positives = 51/67 (76%) Frame = +1 Query: 183 YSRQADGRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCS 242 + R DGRKVLRSSIREFLCSEA+ ALG+P+TRA S+VTSD V RD G ERCS Sbjct: 1498 FLRDGDGRKVLRSSIREFLCSEAMAALGIPSTRAASLVTSDLYVSRDPLNSGQRIDERCS 1677 Query: 243 VVLRIAP 249 VVLR+AP Sbjct: 1678 VVLRLAP 1698 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 44/57 (77%) Frame = +2 Query: 567 RQRLARECESGVDVKDVQTERVRVMNNNNPHVVLRNYIAQNAIAAAENGDFSEVQRV 623 R+RL REC+ D+ + ER+ VMN+ NP VVLRNYIAQNAI AAENGDFSEV+ + Sbjct: 4487 RRRLTRECDGTSDLSLIIKERLNVMNSTNPRVVLRNYIAQNAIQAAENGDFSEVETI 4657 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 48/62 (77%) Frame = +3 Query: 506 ELAMLVSMAQSNPALFQMISDRGTVSRQLERLSRLKELMDTTEEQLRVKHTEHWSDWIQK 565 ELAM++SMAQ+NP +F M++DR VS QL+ + RLKEL++T +++L+ KH + W W+ + Sbjct: 3531 ELAMILSMAQTNPVMFGMVADRPCVSHQLDLMCRLKELLETDQDELKEKHHDDWIRWVSR 3710 Query: 566 YR 567 YR Sbjct: 3711 YR 3716 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/62 (54%), Positives = 43/62 (69%) Frame = +2 Query: 252 IRFGSFEIFKRADEFTGRQGPSYGHDELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFK 311 RFGSFEIF D F+G QGPS G ++R Q+L+YVIE F+P I + Y + RN AFF+ Sbjct: 1907 FRFGSFEIFLGRDGFSGLQGPSTGRHDIRAQLLDYVIETFFPSIQQAYSNRKNRNLAFFR 2086 Query: 312 EV 313 EV Sbjct: 2087 EV 2092 >BADN01010693.1 Thunnus orientalis DNA, contig: superscaffoldBa00000162_0020, whole genome shotgun sequence Length = 5747 Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 43/62 (69%), Positives = 55/62 (88%) Frame = -3 Query: 506 ELAMLVSMAQSNPALFQMISDRGTVSRQLERLSRLKELMDTTEEQLRVKHTEHWSDWIQK 565 ELAML+SMAQSNPALFQMISDR T++RQL+RLS+LK+LMD +EE+L+ KH + W+ WI + Sbjct: 2229 ELAMLLSMAQSNPALFQMISDRMTIARQLDRLSKLKDLMDISEEELKTKHADEWTHWITR 2050 Query: 566 YR 567 YR Sbjct: 2049 YR 2044 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/74 (63%), Positives = 56/74 (75%) Frame = -1 Query: 619 EVQRVLKVLEKPFSVQEGLEQPGWMGRGGAAIPGERDETEEEGSNSSGAGARGLVPYDSK 678 +VQ+VLKVLEKPFS Q LE P W+GRGGA GERDE +E + +S + AR VPYDSK Sbjct: 1370 QVQQVLKVLEKPFSSQPDLELPAWVGRGGATEQGERDEGQE--AEASTSTARNPVPYDSK 1197 Query: 679 PPVWANEICVTXSS 692 PP WA++ICVT SS Sbjct: 1196 PPAWAHKICVT*SS 1155 Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/58 (72%), Positives = 48/58 (82%) Frame = -1 Query: 564 QKYRQRLARECESGVDVKDVQTERVRVMNNNNPHVVLRNYIAQNAIAAAENGDFSEVQ 621 Q YR+RLARE E DV+ VQ ERVRVM++ NP VVLRNYIAQNAI AAE+GDFSEV+ Sbjct: 1817 QCYRKRLARELEGQSDVQAVQEERVRVMDSTNPRVVLRNYIAQNAIEAAESGDFSEVR 1644 >BADN01079896.1 Thunnus orientalis DNA, contig: superscaffoldBa00003456_0012, whole genome shotgun sequence Length = 1501 Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 60/169 (35%) Frame = +2 Query: 295 IHRNYPDLTERNTAFFKEVTVRTARLVAQWQCVGFCHG---------------------- 332 +H Y + F+ V TA L+AQW VGF HG Sbjct: 233 VHDLYFVILSFF*VFYTTVVNETAHLIAQWMSVGFAHGEKILFCLNIESLSLYIN*LLFC 412 Query: 333 -----VLNTDNMSILGLTLDYGPFGFMDRFDP---------------------------- 359 V NTDN S+L +T+DYGPFGFM+ ++P Sbjct: 413 VIVTGVCNTDNFSLLSITIDYGPFGFMESYNPSVCDDACLS*PEISECPIFVSFQTAVLH 592 Query: 360 -----DFICNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQ 403 DF+ N SD+ GRYS AQ + +NL +L +AL P L + ++ Sbjct: 593 LQTLADFVPNTSDDEGRYSVGAQADVGLFNLEKLLDALSPVLSNKQQKE 739 >BADN01079895.1 Thunnus orientalis DNA, contig: superscaffoldBa00003456_0011, whole genome shotgun sequence Length = 2691 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/34 (67%), Positives = 28/34 (82%) Frame = +2 Query: 183 YSRQADGRKVLRSSIREFLCSEAVFALGVPTTRA 216 + R DGR V+RSS+REFLCSEA+ LGVPT+RA Sbjct: 2174 HRRSGDGRAVIRSSVREFLCSEAMHFLGVPTSRA 2275 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.318 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 478,850,708 Number of extensions: 6265125 Number of successful extensions: 24007 Number of sequences better than 1.0e-02: 5 Number of HSP's gapped: 23993 Number of HSP's successfully gapped: 19 Length of query: 692 Length of database: 228,165,821 Length adjustment: 128 Effective length of query: 564 Effective length of database: 211,133,885 Effective search space: 119079511140 Effective search space used: 119079511140 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 45 (21.9 bits)