genewise output
Score 89.79 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000640_2.0  309 FFKEVTVRTARLVAQWQCVGFCH                           
                     F+  V   TA L+AQW  VGF H                           
                     FYTTVVNETAHLIAQWMSVGFAH          G:G[ggt]         
BADN01079896.1   275 ttaaggagagccagctatggtgcGGTGAGAA  Intron 1   CAGGT 
                     taccttaaccattcagtctgtca <1-----[345  :  425]-1>   
                     ttcacataaatattggggtgtat                           


SPP00000640_2.0  333 VLNTDNMSILGLTLDYGPFGFMDRFDP                       
                     V NTDN+S+L +T+DYGPFGFM+ ++P                       
                     VCNTDNFSLLSITIDYGPFGFMESYNP          D:N[aat]     
BADN01079896.1   428 gtaagatacctaaagtgctgtagttacAGTGTGTG  Intron 2     
                     tgacaatgttctctaagctgttacaac <1-----[510  :  608]  
                     gccaccctcgccccccagtccgggccc                       


SPP00000640_2.0  360      FICNASDNSGRYSYQAQPAICRWNLARLAEALEPDL         
                          F+ N SD+ GRYS  AQ  +  +NL +L +AL P L         
                          FVPNTSDDEGRYSVGAQADVGLFNLEKLLDALSPVL         
BADN01079896.1   606 CAGATtgcaatggggatagggcggggctacgaccggcacgc         
                     -1>  ttcaccaaaggagtgcacatgttataattactgctt         
                          tcacgtttgcaccaatgtccagccaggcgctcttgt         


//
Making a G in phase 1 intron
Making a N in phase 1 intron
>BADN01079896.1.pep
FYTTVVNETAHLIAQWMSVGFAHGVCNTDNFSLLSITIDYGPFGFMESYNPNFVPNTSDD
EGRYSVGAQADVGLFNLEKLLDALSPVL
//
>BADN01079896.1.[275:718].sp
TTTTATACCACAGTCGTAAATGAAACAGCACATCTAATTGCTCAGTGGATGTCGGTTGGG
TTTGCACATGGTGTGTGCAACACAGACAACTTCAGTCTCCTGTCCATCACCATCGACTAC
GGACCGTTTGGCTTCATGGAGTCGTACAACCCCAATTTTGTCCCAAACACGTCTGATGAT
GAGGGCAGATACAGCGTAGGAGCTCAGGCTGACGTCGGACTGTTCAACCTAGAGAAGCTC
CTGGACGCTCTCAGTCCTGTGCTT
//
BADN01079896.1	GeneWise	match	275	718	89.79	+	.	BADN01079896.1-genewise-prediction-1
BADN01079896.1	GeneWise	cds	275	344	0.00	+	0	BADN01079896.1-genewise-prediction-1
BADN01079896.1	GeneWise	intron	345	425	0.00	+	.	BADN01079896.1-genewise-prediction-1
BADN01079896.1	GeneWise	cds	426	509	0.00	+	2	BADN01079896.1-genewise-prediction-1
BADN01079896.1	GeneWise	intron	510	608	0.00	+	.	BADN01079896.1-genewise-prediction-1
BADN01079896.1	GeneWise	cds	609	718	0.00	+	2	BADN01079896.1-genewise-prediction-1
//

genewise output
Score 16.20 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000640_2.0  275 GHDELRTQMLEYVIEN                                  
                     GH E+R  +L ++ EN                                  
                     GHGEIRLCVLHHLGEN                                  
BADN01079896.1 -1362 gcggaactgccccgga                                  
                     gagatgtgttaatgaa                                  
                     tttacagtccttgaac                                  


//
>BADN01079896.1.pep
GHGEIRLCVLHHLGEN
//
>BADN01079896.1.[1362:1313].sp
GGTCATGGTGAAATCAGACTGTGTGTCCTCCATCATCTGGGAGAAAAC
//
BADN01079896.1	GeneWise	match	1362	1315	16.20	-	.	BADN01079896.1-genewise-prediction-1
BADN01079896.1	GeneWise	cds	1362	1315	0.00	-	0	BADN01079896.1-genewise-prediction-1
//