genewise output Score 16.84 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000640_2.0 477 IKQATELLLH +K TELLLH LKSITELLLH BADN01010694.1 4694 taaaagcctc tagtcattta agtatactat // >BADN01010694.1.pep LKSITELLLH // >BADN01010694.1.[4694:4723].sp TTAAAGAGTATAACTGAACTCCTTTTACAT // BADN01010694.1 GeneWise match 4694 4723 16.84 + . BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise cds 4694 4723 0.00 + 0 BADN01010694.1-genewise-prediction-1 // genewise output Score 932.63 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000640_2.0 1 MASVGSRLTRFYISRPGVIARRFLAH--AGMDDMGVSLSRSSLERLEFD MA +G RL R I PGV R+ AGMD+MG + SRS LERL+FD MAYLGPRLGRCRIFLPGVSVFRLFGTGVAGMDEMGHATSRSPLERLDFD BADN01010694.1 -3814 agttgcccgctcatccggtgtactgaggggaggagcgaactccgccgtg tcatgcgtggggtttcgtcttgttgcgtcgtaatgaccggcctagtata ggtaatggagcttccttgcgcacctttatggtagttagttcgggacccc SPP00000640_2.0 48 NVALKKLPLDPSTEPGVRQVRGSCFSRVQPTPLKNPEFVAVSAPALALL NVALK+LPLDPS EPGVRQV+G+CFSRV+P PL P FVAVS ALALL NVALKRLPLDPSEEPGVRQVKGACFSRVKPQPLTKPRFVAVSHEALALL BADN01010694.1 -3667 aggcaacccgctggcggccgaggtttcgaccccaacctgggtcggcgcc atctagtctaccaacgtgatagcgtcgtacactcacgttctcaactctt ccccgatcgcccggagagggaagtccgcaggggcgtgcgcgatacgggg SPP00000640_2.0 97 GLDAEEVLKDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGDGA GL+ EEV DPLGPEYLSGS VMPGSEPAAHCYCGHQFGQFAGQLGDGA GLNGEEVADDPLGPEYLSGSTVMPGSEPAAHCYCGHQFGQFAGQLGDGA BADN01010694.1 -3520 gcagggggggccgcgtcagtagacgtgcggctttgcctgctggccgggg gtagaatcaactgcaatggccttcgcacccagaggaatgatcgatgagc ggcaggcgcttcgagtccccgggtacgccaccccccgccgccgggtcgg SPP00000640_2.0 146 ACYLGEVKAPAGQSPELLRENPTGRWEIQVKGAGLTPYS ACYLGEVK P GQ PELLRENP+GRWEIQVKGAGLTPYS ACYLGEVKVPPGQDPELLRENPSGRWEIQVKGAGLTPYS BADN01010694.1 -3373 gttcgggagccgcgcgcccgacagctgacgagggcactt cgatgatatccgaacattgaacggggatatagcgtccac cccgcagggtcagtcagggacgcagggcaggaaattttc SPP00000640_2.0 185 QADGRKVLRSSIREFLCSEAVFA QADGRKVLRSSIREFLCSEA++ R:R[aga] QADGRKVLRSSIREFLCSEAMYF BADN01010694.1 -3256 AGGTACGAG Intron 1 TAGAcgggcagcctaaagtctaggatt <2-----[3254 : 2288]-2> acaggattgcgtgattggactat attctactcctaagcgccgggcc SPP00000640_2.0 209 LGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCSVVLRIAPSFI LGVPTTRAGSVVTSDS+V+RD++Y GNPR ERCSVVLRIAP+F+ LGVPTTRAGSVVTSDSKVIRDVYYSGNPRNERCSVVLRIAPTFL BADN01010694.1 -2217 tggcaaaggtggatgaagacggttagaccagattggccagcatc tgtcccgcgcttccagattgataaggacgaaggctttgtccctt gttcctagccagctccagaatgcctactatgactgctcctattc SPP00000640_2.0 253 FGSFEIFKRADEFTGRQGPSYGH FGSFEIFKRADE+TGRQGPSYG R:R[agg] FGSFEIFKRADEYTGRQGPSYGR BADN01010694.1 -2085 AGGTGAGTG Intron 2 CAGGtgttgatacgggtagccgcatgc <2-----[2083 : 1984]-2> tgctattagcaaacggagcgagg tactgatatatacaccgtcctat SPP00000640_2.0 277 DELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFKE DE+R QML+YVIE FYPEI +NYPD ERN AFF+E DEIRGQMLDYVIEMFYPEIQQNYPDRVERNVAFFRE BADN01010694.1 -1913 ggacgcatgtgagattcgaccatcgcggaaggttag aatggattaattattacataaaacagtagatcttga tgcaagggttctggcctgcggtcacggggcgtccag SPP00000640_2.0 313 VTVRTARLVAQWQCVGFCHGVLNTDN V +RTARLVAQWQCVGFCHGVLNTDN VMLRTARLVAQWQCVGFCHGVLNTDN BADN01010694.1 -1805 GTCAGAG Intron 3 TAGgaccagccggctctggttcggcaaga <0-----[1805 : 1496]-0>tttgccgttcagagtgtgagttacaa ggttatacgtgggtaatttacgcacc SPP00000640_2.0 339 MSILGLTLDYGPFGFMD FDPDFI MSILGLTLDYGP+GFMD FDPDFI MSILGLTLDYGPYGFMD R:R[agg] FDPDFI BADN01010694.1 -1417 aaacgcacgtgctgtagAGGTCTGAT Intron 4 TAGGtgcgta tgttgtctaagcagtta <2-----[1364 : 1150]-2> tacatt gccgacagcctatccgc ttatct SPP00000640_2.0 363 CNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLPL CNASDNSGRYSYQAQPAICRWNL +LAEAL+P+LPP RAE V++EYL L CNASDNSGRYSYQAQPAICRWNLLKLAEALDPELPPARAETVMEEYLDL BADN01010694.1 -1130 tagtgatgctttcgccgatatactatgggcgcgcccgcggagaggtcgt gaccaacggacaacacctgggattatcactacatcccgcacttaaatat ctcacctgccccgcggtctggcgggaagtctaggatcgtgatgggtgtg SPP00000640_2.0 412 YNDFYLSNMRKKLGLLRKEEPEDEMLITELMQTMHNT YN FYL NMRKKLGLL+K+EPEDE+LITEL+QTMHNT YNGFYLENMRKKLGLLKKQEPEDEILITELLQTMHNT BADN01010694.1 -983 tagttcgaaaaacgttaacgcgggacaagcccaacaa aagtataatgaatgttaaaacaaatttcattactaac ttcccagcgggggcagggggtgcgcgctggggcgcca SPP00000640_2.0 449 ADFTNTFRSLSQISCPTQEEAED ADFTN+FRSLSQISCP + E+E G:G[ggt] ADFTNSFRSLSQISCPVEGESEG BADN01010694.1 -872 GGTGGGAC Intron 5 CAGGTggtaaatcatacattcggggagg <1-----[871 : 707]-1> catcagtggtgatcgctagagag tccccccccgtaccttcgagtga SPP00000640_2.0 473 ESETIKQATELLLHQSASLEELKAANRPSMDPR E E +KQAT LLL Q ASLEELKAAN+P+MDPR EEERVKQATNLLLEQCASLEELKAANKPTMDPR BADN01010694.1 -635 gggcgacgaacccgctgttggcaggaacaagcc aaagtaaccatttaagcctaataccaacctacg gagtcagtaccggggtataggcgtccaccgtag // Making a R in phase 2 intron Making a R in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron >BADN01010694.1.pep MAYLGPRLGRCRIFLPGVSVFRLFGTGVAGMDEMGHATSRSPLERLDFDNVALKRLPLDP SEEPGVRQVKGACFSRVKPQPLTKPRFVAVSHEALALLGLNGEEVADDPLGPEYLSGSTV MPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKVPPGQDPELLRENPSGRWEIQVKGA GLTPYSRQADGRKVLRSSIREFLCSEAMYFLGVPTTRAGSVVTSDSKVIRDVYYSGNPRN ERCSVVLRIAPTFLRFGSFEIFKRADEYTGRQGPSYGRDEIRGQMLDYVIEMFYPEIQQN YPDRVERNVAFFREVMLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFD PDFICNASDNSGRYSYQAQPAICRWNLLKLAEALDPELPPARAETVMEEYLDLYNGFYLE NMRKKLGLLKKQEPEDEILITELLQTMHNTGADFTNSFRSLSQISCPVEGESEGEEERVK QATNLLLEQCASLEELKAANKPTMDPR // >BADN01010694.1.[3814:535].sp ATGGCGTATTTAGGACCTCGGCTGGGACGGTGCCGTATTTTCCTCCCTGGTGTGTCCGTG TTCAGACTCTTCGGTACTGGTGTAGCTGGGATGGATGAAATGGGTCATGCAACGAGTCGT TCCCCGCTGGAGCGACTCGACTTCGACAACGTCGCCCTCAAGAGACTTCCCCTGGACCCC TCCGAGGAGCCAGGGGTACGGCAGGTGAAAGGAGCGTGTTTCTCCCGGGTCAAACCGCAG CCGCTGACCAAGCCTCGGTTCGTGGCCGTGTCACATGAAGCCCTGGCGCTGCTGGGGCTG AACGGAGAGGAGGTCGCGGACGATCCTCTCGGGCCAGAGTATCTCAGCGGCTCCACGGTG ATGCCTGGATCCGAGCCCGCCGCACACTGCTACTGCGGCCACCAGTTCGGCCAGTTCGCC GGGCAGCTGGGTGACGGGGCGGCCTGCTACCTGGGCGAAGTGAAGGTGCCTCCCGGACAG GATCCCGAACTGCTGCGGGAAAACCCGAGCGGACGGTGGGAGATCCAAGTGAAGGGAGCA GGACTTACTCCTTATTCCAGACAAGCTGATGGCCGTAAAGTCCTTCGCTCCAGTATAAGA GAGTTCCTGTGCAGCGAGGCGATGTACTTCTTGGGTGTTCCCACCACTAGAGCGGGCTCC GTAGTGACCTCTGACAGCAAAGTGATACGAGATGTGTACTACAGTGGAAACCCTCGAAAT GAGAGATGCTCTGTGGTCCTTCGCATCGCTCCAACTTTTCTCAGGTTTGGATCCTTTGAG ATATTTAAACGTGCAGATGAATACACAGGCCGCCAGGGTCCCAGCTATGGACGTGATGAG ATCCGAGGACAGATGTTGGATTATGTCATTGAGATGTTCTACCCTGAGATCCAGCAGAAT TACCCAGACCGGGTGGAGAGGAACGTGGCTTTCTTCAGAGAGGTGATGCTTCGTACAGCT CGACTCGTGGCTCAGTGGCAGTGTGTAGGATTTTGTCATGGAGTCCTGAACACAGACAAC ATGAGCATCCTGGGACTCACACTGGACTACGGTCCATATGGCTTCATGGACAGGTTTGAT CCAGATTTCATTTGCAATGCCTCAGACAACTCTGGGCGCTACTCCTACCAGGCCCAGCCG GCTATCTGTAGGTGGAACCTGTTGAAGTTAGCAGAGGCTCTCGATCCAGAGCTGCCACCT GCCCGGGCTGAGACAGTTATGGAGGAGTATCTGGATTTGTATAATGGCTTCTACCTAGAG AACATGAGGAAGAAGCTGGGCTTATTGAAGAAGCAGGAGCCTGAGGACGAGATCCTGATC ACTGAGCTGCTGCAGACCATGCACAACACAGGTGCTGACTTCACCAACAGCTTCCGCAGC TTGAGTCAAATCTCCTGTCCTGTCGAGGGAGAGAGTGAGGGAGAGGAAGAGCGTGTCAAA CAGGCTACAAACCTCCTGCTGGAGCAGTGTGCATCTTTAGAGGAGCTCAAGGCTGCCAAC AAACCCACCATGGATCCACGG // BADN01010694.1 GeneWise match 3814 537 933.63 - . BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise cds 3814 3255 0.00 - 0 BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise intron 3254 2288 0.00 - . BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise cds 2287 2084 0.00 - 1 BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise intron 2083 1984 0.00 - . BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise cds 1983 1806 0.00 - 1 BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise intron 1805 1496 0.00 - . BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise cds 1495 1365 0.00 - 0 BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise intron 1364 1150 0.00 - . BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise cds 1149 872 0.00 - 1 BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise intron 871 707 0.00 - . BADN01010694.1-genewise-prediction-1 BADN01010694.1 GeneWise cds 706 537 0.00 - 2 BADN01010694.1-genewise-prediction-1 //