genewise output
Score 144.13 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000637_2.0   93 EVEWDRFLKRLDVQMQMSDTVLSQHPAAQTLSSDMRFLHVQTK       
                     +V+WD FL+RLD ++Q++   L     ++++S D+ ++  +T        
                     QVQWDAFLQRLDDELQLNAKTLDGRLQSKSISPDVPLVDARTG       
BADN01079553.1  2963 cgctggtccctgggtccagaacggccctaaatcggccgggaag       
                     atagacttagtaaatatacactaggtacagtccatcttacgcg       
                     ggggtctcgtgttgaagctatgtggtgagttattatcttcaaa       


SPP00000637_2.0  136                           NVSLGQYLGKGENLLLVLLRHFG 
                                                V+L +YLGKG+ +LLVL+R F  
                                E:E[gaa]       AVTLQKYLGKGKKILLVLIRQFS 
BADN01079553.1  3092 GAGTGAGTT  Intron 1   CAGAggatcatcgagaaaccgtacctt 
                       <2-----[3094 : 4757]-2> ctctaaatgagaattttttgatc 
                                               agaagatcgatagtgggacagcc 


SPP00000637_2.0  160 XLPXRDHLTELKNSK                       MLLEAQSLRVL 
                      L  R HL +L+ +K                         L+A S+ V+ 
                     CLLCRLHLQDLEKNK                       SSLDAHSVEVV 
BADN01079553.1  4828 tcctcccccgtgaaaGTAAACA  Intron 2   CAGatcggctgggg 
                     gttggtataataaaa<0-----[4873 : 7617]-0>gctacactatt 
                     tgccttctgtgagtg                       ccttacagggg 


SPP00000637_2.0  186 VVSYGSLEGATFWLEQTGFEFDMLLDTERT                    
                     VVS+G  EGA+ WL++T  +FDMLLD ER                     
                     VVSFGCQEGASHWLQETSCQFDMLLDAERK                    
BADN01079553.1  7651 ggttgtcgggtctccgaatctgactgggaa                    
                     ttctggaagccagtaacggatatttacaga                    
                     tcacctggatacgggggctgccgggctgag                    


SPP00000637_2.0  216                        VYKMFGLGSSMSKVMKFKLMFHYSEI 
                                            +Y  FGLG+S+ KV+ F  M+ Y+E  
                                            LYAAFGLGASLKKVLNFSNMLRYAEY 
BADN01079553.1  7741 GTCAGGG  Intron 3   CAGctggtgtggtcaagtataaacctggt 
                     <0-----[7741 : 7828]-0>tacctgtgcctaattatgattgacaa 
                                            gccattgagtggagacctcggtttac 


SPP00000637_2.0  242 MAMNRTLPEMPPQFIEDLFQ                       MGGDFV 
                     +A N   P     + +D+FQ                       +GGDFV 
                     VADNYEFPRGLASIQDDMFQ                       LGGDFV 
BADN01079553.1  7907 gggatgtcagcgtacggatcGTAAGTT  Intron 4   CAGcgggtg 
                     tcaaaatcggtcctaaatta<0-----[7967 : 8292]-0>tggatt 
                     ggcttgtaaagagtatcgtg                       ggcctt 


SPP00000637_2.0  268 LEQDGKVIFSYRCKSPVDRPSATQILA                       
                     L++ G+V+FS+ C+SP+DRPS   IL+                       
                     LDEHGRVLFSHCCQSPIDRPSVEDILS                       
BADN01079553.1  8311 tggcgagcttcttcacagcctgggatt                       
                     taaaggtttcaggagctagcctaattc                       
                     gcatggggctcctgtaacacggactat                       


//
Making a E in phase 2 intron
>BADN01079553.1.pep
QVQWDAFLQRLDDELQLNAKTLDGRLQSKSISPDVPLVDARTGEAVTLQKYLGKGKKILL
VLIRQFSCLLCRLHLQDLEKNKSSLDAHSVEVVVVSFGCQEGASHWLQETSCQFDMLLDA
ERKLYAAFGLGASLKKVLNFSNMLRYAEYVADNYEFPRGLASIQDDMFQLGGDFVLDEHG
RVLFSHCCQSPIDRPSVEDILS
//
>BADN01079553.1.[2963:8391].sp
CAGGTGCAGTGGGATGCCTTTCTCCAGCGTTTGGATGATGAGTTACAACTGAACGCTAAA
ACTCTGGATGGGCGGCTTCAGTCAAAGAGTATTTCACCTGATGTACCTCTCGTTGATGCC
AGAACAGGAGAAGCAGTGACATTACAGAAATATCTCGGGAAAGGTAAAAAGATTCTGCTG
GTGTTAATCCGACAGTTCTCCTGTCTGCTCTGCCGTCTTCACCTTCAGGATTTGGAAAAG
AATAAGAGCTCCCTTGATGCACACTCAGTGGAGGTGGTGGTTGTCTCATTCGGCTGTCAG
GAGGGAGCTTCACACTGGCTGCAGGAGACGAGCTGTCAGTTCGACATGCTGTTGGACGCT
GAGAGAAAGCTGTACGCCGCATTTGGTTTGGGAGCGTCTCTGAAGAAAGTGTTAAACTTC
AGTAACATGCTGCGTTATGCTGAATACGTGGCGGACAATTATGAGTTTCCAAGAGGACTG
GCATCGATTCAAGATGACATGTTTCAGCTGGGGGGCGACTTTGTTTTGGACGAACATGGG
AGGGTGCTGTTCTCTCACTGCTGTCAGAGTCCAATAGACCGACCCTCGGTGGAAGACATT
TTATCT
//
BADN01079553.1	GeneWise	match	2963	8391	144.13	+	.	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	cds	2963	3093	0.00	+	0	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	intron	3094	4757	0.00	+	.	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	cds	4758	4872	0.00	+	1	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	intron	4873	7617	0.00	+	.	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	cds	7618	7740	0.00	+	0	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	intron	7741	7828	0.00	+	.	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	cds	7829	7966	0.00	+	0	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	intron	7967	8292	0.00	+	.	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	cds	8293	8391	0.00	+	0	BADN01079553.1-genewise-prediction-1
//

genewise output
Score 15.32 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000637_2.0  142 QYLGKG                                            
                     QYLGKG                                            
                     QYLGKG                                            
BADN01079553.1 -6464 cttgag                                            
                     aatgag                                            
                     atagag                                            


//
>BADN01079553.1.pep
QYLGKG
//
>BADN01079553.1.[6464:6445].sp
CAATATTTAGGGAAAGGG
//
BADN01079553.1	GeneWise	match	6464	6447	15.32	-	.	BADN01079553.1-genewise-prediction-1
BADN01079553.1	GeneWise	cds	6464	6447	0.00	-	0	BADN01079553.1-genewise-prediction-1
//