genewise output
Score 15.75 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000633_2.0   10 LDSRSRSPWSL                                       
                     +D   +SPW L                                       
                     IDQEGQSPWRL                                       
BADN01083792.1   864 agcggctctcc                                       
                     taaagaccggt                                       
                     ccgaaggagag                                       


//
>BADN01083792.1.pep
IDQEGQSPWRL
//
>BADN01083792.1.[864:896].sp
ATCGACCAGGAAGGACAGTCGCCATGGCGACTG
//
BADN01083792.1	GeneWise	match	864	896	15.75	+	.	BADN01083792.1-genewise-prediction-1
BADN01083792.1	GeneWise	cds	864	896	0.00	+	0	BADN01083792.1-genewise-prediction-1
//

genewise output
Score 88.78 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000633_2.0    1 MVYVSN                          QVLDSRSRSPWSLSFLT 
                     MVYVSN                          QVLDSR +SPW LSFL  
                     MVYVSN          G:G[ggt]        QVLDSRMQSPWRLSFLV 
BADN01083792.1 -2049 agtgtaGGTGAGTG  Intron 1   CAGGTcgcgacactctccttcg 
                     ttatca <1-----[2030 :  920]-1>  attaggtaccggtcttt 
                     ggcgtc                          gcgccggggagagccgc 


SPP00000633_2.0   25 DFFWGAVEFIGL                          FQTLVQPDLSK 
                     D+FWG VEF+GL                          F+TL+ P+++K 
                     DLFWGVVEFFGL           F:Y[tat]       FKTLIHPNMTK 
BADN01083792.1  -866 gcttggggttgcTAGTAAGTC  Intron 2   CAGTtaataccaaaa 
                     attggttattgt  <2-----[828  :  420]-2> tacttacatca 
                     tccgatggtccg                          tgaatctcgag 


SPP00000633_2.0   49 DGNNSASSRFSDGRG                                   
                     DGN  ASS FSDGRG                                   
                     DGNG-ASSSFSDGRG                                   
BADN01083792.1  -385 ggag gttataggag                                   
                     agag cccgtgaggg                                   
                     tact tgaccttcag                                   


//
Making a G in phase 1 intron
Making a Y in phase 2 intron
>BADN01083792.1.pep
MVYVSNGQVLDSRMQSPWRLSFLVDLFWGVVEFFGLYFKTLIHPNMTKDGNGASSSFSDG
RG
//
>BADN01083792.1.[2049:342].sp
ATGGTGTACGTGTCTAACGGTCAGGTCCTGGACAGCCGGATGCAGTCGCCATGGCGACTG
TCCTTCCTGGTCGATCTCTTCTGGGGAGTTGTGGAGTTTTTCGGCCTGTATTTTAAGACA
TTAATTCACCCTAACATGACAAAGGATGGAAACGGTGCTTCGTCAAGCTTCAGTGATGGC
AGAGGG
//
BADN01083792.1	GeneWise	match	2049	344	88.78	-	.	BADN01083792.1-genewise-prediction-1
BADN01083792.1	GeneWise	cds	2049	2031	0.00	-	0	BADN01083792.1-genewise-prediction-1
BADN01083792.1	GeneWise	intron	2030	920	0.00	-	.	BADN01083792.1-genewise-prediction-1
BADN01083792.1	GeneWise	cds	919	829	0.00	-	2	BADN01083792.1-genewise-prediction-1
BADN01083792.1	GeneWise	intron	828	420	0.00	-	.	BADN01083792.1-genewise-prediction-1
BADN01083792.1	GeneWise	cds	419	344	0.00	-	1	BADN01083792.1-genewise-prediction-1
//