TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000636_2.0 # Protein # Selenoprotein J (SelJ) # Zebrafish (Danio rerio) (342 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01033484.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 141 2e-46 BADN01079312.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 139 6e-35 BADN01033485.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 96 3e-20 >BADN01033484.1 Thunnus orientalis DNA, contig: superscaffoldBa00000789_0016, whole genome shotgun sequence Length = 4877 Score = 141 bits (356), Expect(2) = 2e-46, Method: Compositional matrix adjust. Identities = 72/112 (64%), Positives = 77/112 (68%), Gaps = 29/112 (25%) Frame = +2 Query: 116 PRPQLPIEGPWRHASLKGFIKNVDAGKEETG----------------------------- 146 PRPQLPIEGPWRH SLK F+KNVDAGKEETG Sbjct: 4409 PRPQLPIEGPWRHGSLKNFLKNVDAGKEETGEAPLFNPSYDTYDIIKRLKTN*CVLVSTG 4588 Query: 147 CETDTQIDGVTKLAPIVACYAGKPEMLEKVEEAVRVTQNNDLCVAETLAAAR 198 CE D QIDG+TKLAP+VA YAGKP+MLEKVE+AVRVTQNND CVAETLAAAR Sbjct: 4589 CENDCQIDGITKLAPVVAFYAGKPDMLEKVEQAVRVTQNNDACVAETLAAAR 4744 Score = 67.4 bits (163), Expect(2) = 2e-46, Method: Compositional matrix adjust. Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = +3 Query: 78 SECGGLNVEDFKQRTYKFFGPGSEYDTPVNDPYRDKGA 115 S C GLNV+D KQRT KFFGPGSEYDTP+NDPYR++G Sbjct: 4209 SICPGLNVDDLKQRTLKFFGPGSEYDTPINDPYRERGG 4322 Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 48/63 (76%), Positives = 54/63 (85%) Frame = +1 Query: 24 QPLHWVYDLSKLSVLLSQSPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGGL 83 QPLHWVYDL KL +L+Q P PEFR ESANPFYRR TGQQSCYGDQA++LLESLSECGG Sbjct: 3460 QPLHWVYDLQKLQGILAQDPNPEFRTESANPFYRRQTGQQSCYGDQAYVLLESLSECGGR 3639 Query: 84 NVE 86 ++ Sbjct: 3640 HLH 3648 >BADN01079312.1 Thunnus orientalis DNA, contig: superscaffoldBa00003402_0008, whole genome shotgun sequence Length = 12160 Score = 139 bits (350), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/143 (52%), Positives = 87/143 (60%), Gaps = 41/143 (28%) Frame = -2 Query: 146 GCETDTQIDGVTKLAPIVACYAGKPEMLEKVEEAVRVTQNNDLCVAETLAAA-------- 197 GC+ D Q+DGVTKLAP+VA YAG+PEMLEKVEEA+RVTQNND+CVA TLAAA Sbjct: 10287 GCDVDCQMDGVTKLAPVVAMYAGRPEMLEKVEEAMRVTQNNDMCVAVTLAAAR**TVSKM 10108 Query: 198 ---------------------------------RFLEHFILNGPDPKALDAVLKQLSDPE 224 RFLEHFILNGPD LDAVL QL+DP+ Sbjct: 10107 MVAFKLMILQS*NYFKREMLNPGLHV*FYICDVRFLEHFILNGPDHNVLDAVLAQLNDPK 9928 Query: 225 RKNPQELDKAVIGHIHQVKDNLN 247 R+NPQ+LD+AVIG V + N Sbjct: 9927 RQNPQDLDRAVIGKATYVFIHFN 9859 Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 40/63 (63%), Positives = 52/63 (82%), Gaps = 1/63 (1%) Frame = -2 Query: 24 QPLHWVYDLSKLSVLLSQ-SPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGG 82 QP+HW+Y+ +L +LS P PEFRP+SANPFYRR TG+Q+CYGDQA++LLESLS+CGG Sbjct: 12108 QPMHWIYNPDRLKEVLSDLEPSPEFRPQSANPFYRRETGEQTCYGDQAYVLLESLSQCGG 11929 Query: 83 LNV 85 + Sbjct: 11928 TEI 11920 Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/47 (70%), Positives = 37/47 (78%) Frame = -3 Query: 264 LPGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIGACIGAQV 310 LPGAFQ ALH VLT + ++ VR TM CGGCT SR+SFIGAC GAQV Sbjct: 8588 LPGAFQGALHVVLTQNQLDEGVRVTMRCGGCTASRASFIGACFGAQV 8448 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/47 (53%), Positives = 34/47 (72%) Frame = -3 Query: 115 APRPQLPIEGPWRHASLKGFIKNVDAGKEETGCETDTQIDGVTKLAP 161 P+ LPI+GPWR+ SLK F +NVDAGKEETG ++D + K++P Sbjct: 10466 GPKAILPIDGPWRNGSLKAFFRNVDAGKEETGKDSDHK---CMKISP 10335 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = -2 Query: 83 LNVEDFKQRTYKFFGPGSEYDTPVNDPYRDKGA 115 ++V+D +R YKFFGPG+ YD P+NDPYR KG Sbjct: 11196 VDVQDLTRRIYKFFGPGTVYDLPLNDPYRKKGG 11098 Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/29 (65%), Positives = 22/29 (75%) Frame = -3 Query: 237 GHIHQVKDNLNKKPKELIPAVFPNTXGLP 265 HIHQVKDNL K ++L+PAVF NT G P Sbjct: 9038 AHIHQVKDNLAKTSQQLVPAVFTNT*GKP 8952 >BADN01033485.1 Thunnus orientalis DNA, contig: superscaffoldBa00000789_0017, whole genome shotgun sequence Length = 3039 Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 47/58 (81%), Positives = 49/58 (84%) Frame = +3 Query: 263 GLPGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIGACIGAQVGLEGIPASWK 320 GLPGAFQAALHGVLTA YEQAVRDTMSCGGCTCSR SFIGAC+GAQV L P+ K Sbjct: 795 GLPGAFQAALHGVLTAKQYEQAVRDTMSCGGCTCSRGSFIGACLGAQVRLSVNPSFIK 968 Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 33/48 (68%), Positives = 38/48 (79%) Frame = +2 Query: 190 VAETLAAARFLEHFILNGPDPKALDAVLKQLSDPERKNPQELDKAVIG 237 + + + RFLEHFILNG DPKALD VL QL+DP RK PQ+LDKAVIG Sbjct: 152 IVHGIISPRFLEHFILNGSDPKALDTVLHQLNDPNRKQPQDLDKAVIG 295 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/28 (75%), Positives = 24/28 (85%) Frame = +1 Query: 237 GHIHQVKDNLNKKPKELIPAVFPNTXGL 264 GHI QVK+NL+K PKELIP VFPNT G+ Sbjct: 559 GHILQVKENLSKTPKELIPTVFPNT*GI 642 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.317 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 262,971,067 Number of extensions: 3871519 Number of successful extensions: 13250 Number of sequences better than 1.0e-02: 3 Number of HSP's gapped: 13246 Number of HSP's successfully gapped: 14 Length of query: 342 Length of database: 228,165,821 Length adjustment: 122 Effective length of query: 220 Effective length of database: 211,932,257 Effective search space: 46625096540 Effective search space used: 46625096540 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 43 (21.2 bits)