genewise output
Score 84.09 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000634_2.0   49 RVYGRNAVVVREALADSHPELKVMINPHNPRRNSFEITLMDGER      
                     RVY R+A  V+ AL  + P L V++NP  PR+ SF+ITL+DG +      
                     RVYRRHAEEVKSALLAARPGLTVVLNPEKPRKKSFDITLLDGGK      
BADN01109583.1    72 cgtaccggggatgccggccgcaggcacgaccaaatgaaccggga      
                     gtaggacaataccttccgcgtctttacaacgaagtatcttagga      
                     agtgttcgggatacgtactagtgccctgattgacctctggtaca      


SPP00000634_2.0   93                           DVLWSGIKKGPPRKLKFPEPAEV 
                                                 LW+GIK GPP +LKFP+P  V 
                               A:E[gaa]        TSLWTGIKLGPPARLKFPQPDVV 
BADN01109583.1   204 GGTGAGGA  Intron 1   AAGAAatctagaatgccgacatcccggg 
                      <1-----[205  : 1415]-1>  cctgcgtatgcccgtatcacatt 
                                               atggcaaagtgttgggctaatta 


SPP00000634_2.0  117 VTALKQALEKE                                       
                     V AL+ AL+ E                                       
                     VAALQDALKAE                                       
BADN01109583.1  1487 gggccggcagg                                       
                     tcctaactaca                                       
                     tttagctgggg                                       


//
Making a E in phase 1 intron
>BADN01109583.1.pep
RVYRRHAEEVKSALLAARPGLTVVLNPEKPRKKSFDITLLDGGKETSLWTGIKLGPPARL
KFPQPDVVVAALQDALKAE
//
>BADN01109583.1.[72:1519].sp
CGAGTGTATAGGCGTCATGCCGAGGAGGTGAAATCTGCACTCCTGGCTGCACGCCCTGGA
CTGACTGTGGTCCTCAACCCTGAGAAACCTCGTAAGAAAAGCTTCGATATCACTCTGCTG
GATGGAGGCAAAGAAACATCTCTGTGGACCGGAATAAAATTGGGTCCGCCTGCTAGGCTG
AAGTTCCCTCAACCAGATGTTGTAGTTGCTGCTCTACAGGACGCTCTGAAGGCGGAG
//
BADN01109583.1	GeneWise	match	72	1519	84.09	+	.	BADN01109583.1-genewise-prediction-1
BADN01109583.1	GeneWise	cds	72	204	0.00	+	0	BADN01109583.1-genewise-prediction-1
BADN01109583.1	GeneWise	intron	205	1415	0.00	+	.	BADN01109583.1-genewise-prediction-1
BADN01109583.1	GeneWise	cds	1416	1519	0.00	+	2	BADN01109583.1-genewise-prediction-1
//

genewise output
Score 14.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000634_2.0   59 REALADSHPE                                        
                     R  L  SHPE                                        
                     RSTLGSSHPE                                        
BADN01109583.1 -6791 aaacgttccg                                        
                     ggctgccaca                                        
                     attcatttcg                                        


//
>BADN01109583.1.pep
RSTLGSSHPE
//
>BADN01109583.1.[6791:6760].sp
AGAAGTACTCTCGGATCTTCTCATCCCGAG
//
BADN01109583.1	GeneWise	match	6791	6762	14.92	-	.	BADN01109583.1-genewise-prediction-1
BADN01109583.1	GeneWise	cds	6791	6762	0.00	-	0	BADN01109583.1-genewise-prediction-1
//