TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000631_2.0 # Protein # Selenocysteine synthase (SecS) # Zebrafish (Danio rerio) (490 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01005542.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 122 2e-50 BADN01005541.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 91 1e-17 >BADN01005542.1 Thunnus orientalis DNA, contig: superscaffoldBa00000074_0004, whole genome shotgun sequence Length = 9622 Score = 122 bits (307), Expect(2) = 2e-50, Method: Compositional matrix adjust. Identities = 69/141 (48%), Positives = 77/141 (54%), Gaps = 61/141 (43%) Frame = -1 Query: 234 RLEELSVLCAKHDIPHIVNNAYGVQSSK------------------------CMHL---- 265 RLEEL+ +C+K+DIPHIVNNAYGVQSSK C+HL Sbjct: 5677 RLEELAAMCSKYDIPHIVNNAYGVQSSKCMHLIQQVGISNLQSYLMQ*NTCACLHL*SYA 5498 Query: 266 ---------------------------------IQQGARVGRIDAFVQSLDKNFMVPVGG 292 QGARVGRIDAFVQSLDKNFMVPVGG Sbjct: 5497 AV*TGEHFLNTNMYVCCSLATDTAVA*MFLGLVFHQGARVGRIDAFVQSLDKNFMVPVGG 5318 Query: 293 AIIAGFDENFIQEISKIYPGR 313 AIIAGFDE+FIQEISK+YPG+ Sbjct: 5317 AIIAGFDESFIQEISKMYPGK 5255 Score = 99.8 bits (247), Expect(2) = 2e-50, Method: Compositional matrix adjust. Identities = 46/52 (88%), Positives = 49/52 (94%) Frame = -3 Query: 183 GFEPVVIENVLEGDELRTNLEEVERKIEEFGAENILCVHSTTSCFAPRVPDR 234 GFEPVV+ENVLEGDELRT+LE VE KI+E GAENILCVHSTTSCFAPRVPDR Sbjct: 5924 GFEPVVVENVLEGDELRTDLETVEHKIKELGAENILCVHSTTSCFAPRVPDR 5769 Score = 114 bits (285), Expect(2) = 1e-37, Method: Compositional matrix adjust. Identities = 52/54 (96%), Positives = 52/54 (96%) Frame = -1 Query: 38 QGKCPEEGWSESTIELFLNELAVMDSNNFLGNCGVGEREGRVASSLVARRHYRL 91 QGKCPEEGWSE TIELFLNELAVMDSNNFLGNCGVGEREGRVASSLVARRHYR Sbjct: 7702 QGKCPEEGWSEGTIELFLNELAVMDSNNFLGNCGVGEREGRVASSLVARRHYRF 7541 Score = 66.2 bits (160), Expect(2) = 1e-37, Method: Compositional matrix adjust. Identities = 30/38 (78%), Positives = 33/38 (86%) Frame = -2 Query: 1 MNSENFRLSEKLVSASYVRQGLDARRGHEQLIRRLLDQ 38 MNSENF LSEK+VS SY+RQG ARRGHEQLIR LL+Q Sbjct: 7896 MNSENFTLSEKIVSTSYIRQGCQARRGHEQLIRHLLEQ 7783 Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 51/59 (86%), Positives = 57/59 (96%) Frame = -3 Query: 125 VLKLTGVRSVSSCFVVPMATGMSLTLCFLTLRHRRPKARYILWPRIDQKSCFKSMVTAG 183 V ++GVRSV+SCFVVPMATGMSLTLCFLTLRHRRPKARYI+WPRIDQKSCFK+M+TAG Sbjct: 6449 VCCVSGVRSVASCFVVPMATGMSLTLCFLTLRHRRPKARYIIWPRIDQKSCFKAMITAG 6273 Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 39/48 (81%), Positives = 46/48 (95%) Frame = -2 Query: 89 YRLIHGIGRSGDIAAVQPKAAGSSLLNKITNSVVLDVLKLTGVRSVSS 136 YRLIHGIGRSGDIAA+QPKAAGSSLLNK+TNS+VLD+LKL+GV +S+ Sbjct: 6729 YRLIHGIGRSGDIAAIQPKAAGSSLLNKLTNSIVLDILKLSGVFILSN 6586 Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/36 (80%), Positives = 32/36 (88%), Gaps = 1/36 (2%) Frame = -2 Query: 313 RASASPSLDVLITLLTLGANGYKKLLADRK-ELYGH 347 RASASPSLDVLITLLTLGA+GYKKLL++RK Y H Sbjct: 4197 RASASPSLDVLITLLTLGASGYKKLLSERKVRAYTH 4090 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/32 (71%), Positives = 27/32 (84%) Frame = -3 Query: 342 KELYGHLAQELSALAARHGERLLKTPHNPISL 373 +E+Y LAQEL +LA+ HGERLL TPHNPISL Sbjct: 2117 QEIYSFLAQELKSLASAHGERLLHTPHNPISL 2022 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/31 (77%), Positives = 26/31 (83%) Frame = -1 Query: 374 AMSLNHLEAHSSSAVTQLGSMLFTRQVSGAR 404 AMSL+ L+A AVTQLGSMLFTRQVSGAR Sbjct: 1831 AMSLDGLQAGCDKAVTQLGSMLFTRQVSGAR 1739 >BADN01005541.1 Thunnus orientalis DNA, contig: superscaffoldBa00000074_0003, whole genome shotgun sequence Length = 13152 Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 4/65 (6%) Frame = -2 Query: 391 LGSMLFTRQ----VSGARVVPLGVQQTVSGHTFSGFMSHSEAYPCPYLNAASAIGITKGD 446 L S FT + +RV+PLG +QT+SGHTF GFMSHSE YPCPYLNAASA+GIT+ D Sbjct: 12791 LNSFYFTTSCLFFICVSRVIPLGKEQTISGHTFRGFMSHSEVYPCPYLNAASAVGITRED 12612 Query: 447 VTVCM 451 VT+C+ Sbjct: 12611 VTLCI 12597 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.320 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 361,843,999 Number of extensions: 5240331 Number of successful extensions: 21944 Number of sequences better than 1.0e-02: 2 Number of HSP's gapped: 21943 Number of HSP's successfully gapped: 11 Length of query: 490 Length of database: 228,165,821 Length adjustment: 125 Effective length of query: 365 Effective length of database: 211,533,071 Effective search space: 77209570915 Effective search space used: 77209570915 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 44 (21.6 bits)