genewise output
Score 14.69 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000630_2.0  324 FVIHNLPI-ISKMAAISKAGGNLF                          
                     F+   LPI +   A +S +G NLF                          
                     FLTMELPIRVCFSAGVSLSGENLF                          
BADN01117614.1  1482 tcaagccacgtttgggtcaggact                          
                     ttctatctgtgtccgtctggaatt                          
                     tgtgggacattcaatgagtggcgt                          


//
>BADN01117614.1.pep
FLTMELPIRVCFSAGVSLSGENLF
//
>BADN01117614.1.[1482:1553].sp
TTTCTGACTATGGAGCTGCCAATCCGAGTTTGTTTCTCAGCAGGTGTGTCACTGAGTGGG
GAGAACCTGTTT
//
BADN01117614.1	GeneWise	match	1482	1553	14.69	+	.	BADN01117614.1-genewise-prediction-1
BADN01117614.1	GeneWise	cds	1482	1553	0.00	+	0	BADN01117614.1-genewise-prediction-1
//

genewise output
Score 136.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000630_2.0    7 PSGDSGGAGGYAVFYPAGYQALNPEEHGLDRGFRLTAFSDMKGXGCKVP 
                     P+  S G G   +F P GY++  PEEHG    FRLTAFSD+KGXGCKVP 
                     PASPSKGCGNRGLFSP-GYKSFKPEEHG----FRLTAFSDLKGXGCKVP 
BADN01117614.1 -4267 cgtcaagtgacgcttc gtattacggcg    tccagttgcagtgtagc 
                     ccccgagggaggttcc gaactacaaag    tgtcctcataggggatc 
                     tccccactgcaggttc acgtcacggca    ctcaccgcggaaccgta 


SPP00000630_2.0   56 QETLLKLLQGLEPDRPPGEDGGLGTG-VGDETADFGLVSAAQGPRL    
                     QE LLKLL GL      G+DG  GTG VGD+ ++FG      GP+L    
                     QEALLKLLVGL------GQDGADGTGKVGDQASNFG--QRLPGPQL    
BADN01117614.1 -4135 cggccaccggc      gcgggggagagggcgtatg  cctcgccc    
                     aacttatttgt      gaagcagcgatgaaccatg  agtcgcat    
                     ggtgcacgggg      ggcgccgatgcacaaactc  gggcatgc    


SPP00000630_2.0  101                           IGMDSCVIPLRHGGLSLVQTTDF 
                                               +GMD CVIPLRHGGL LVQTTDF 
                               G:G[ggt]        VGMDCCVIPLRHGGLPLVQTTDF 
BADN01117614.1 -4021 GGTAAGAA  Intron 1   CAGGTggagttgaccacggcccgcaagt 
                      <1-----[4020 : 3146]-1>  tgtaggttctgaggtcttaccat 
                                               aggcctgttagtagcagcgcacc 


SPP00000630_2.0  125 FYPLVEDPYMM                                       
                     FYPLVEDPYMM                                       
                     FYPLVEDPYMM                                       
BADN01117614.1 -3074 ttccgggctaa                                       
                     tacttaacatt                                       
                     cctgggtccgg                                       


//
Making a G in phase 1 intron
>BADN01117614.1.pep
PASPSKGCGNRGLFSPGYKSFKPEEHGFRLTAFSDLKGXGCKVPQEALLKLLVGLGQDGA
DGTGKVGDQASNFGQRLPGPQLGVGMDCCVIPLRHGGLPLVQTTDFFYPLVEDPYMM
//
>BADN01117614.1.[4267:3040].sp
CCTGCCTCCCCCAGCAAAGGCTGTGGGAACCGAGGGCTGTTTTCTCCCGGATACAAGTCT
TTCAAACCCGAGGAGCACGGATTCCGTCTCACAGCCTTCTCGGACCTGAAGGGATGAGGC
TGCAAGGTTCCACAGGAGGCTCTGCTCAAACTCCTGGTGGGGCTGGGGCAGGACGGGGCC
GACGGGACAGGTAAGGTCGGAGACCAAGCATCAAACTTTGGCCAGCGGTTGCCCGGACCT
CAGCTCGGTGTAGGGATGGACTGCTGTGTGATTCCTCTAAGGCATGGAGGGCTCCCACTG
GTCCAGACCACAGACTTCTTCTACCCTCTGGTGGAGGATCCCTACATGATG
//
BADN01117614.1	GeneWise	match	4267	3042	145.62	-	.	BADN01117614.1-genewise-prediction-1
BADN01117614.1	GeneWise	cds	4267	4021	0.00	-	0	BADN01117614.1-genewise-prediction-1
BADN01117614.1	GeneWise	intron	4020	3146	0.00	-	.	BADN01117614.1-genewise-prediction-1
BADN01117614.1	GeneWise	cds	3145	3042	0.00	-	2	BADN01117614.1-genewise-prediction-1
//