genewise output
Score 150.75 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000630_2.0    1 MSGSEPPSGDSGGAGGYAVFYPAGYQALNPEEHGLDRGFRLTAFSDMKG 
                     MSGS  P   +   G    F P GY+   PEEHGL+RGFRLTAFSD+KG 
                     MSGSTSPPPPAEAVGTEGCF-PPGYKPFKPEEHGLERGFRLTAFSDLKG 
BADN01057937.1 22862 atgtatccccgggggaggtt ccgtactacggcgcgcgtccagttgcag 
                     tcgccccccccactgcaggt ccgaactacaaagtaggtgtcctcatag 
                     ggcaccgtcgagtgacgctt ccacgtcacggccggtactcaccgcgga 


SPP00000630_2.0   50 XGCKVPQETLLKLLQGLEPDRPPGEDGGLGTG-VGDETADFGLVSAAQG 
                     XGCKVPQE LLKLL GL      G+D   GTG  GD+ ++FG      G 
                     XGCKVPQEALLKLLAGL------GQDRADGTGKAGDQASNFG--QQLPG 
BADN01057937.1 23006 tgtagccggccaccggc      gcgcgggagagggcgtatg  cctcg 
                     gggatcaacttattcgt      gaagcagcgacgaaccatg  aatcg 
                     accgcgggtgcacggag      ggcgccgacgcacaaactc  gggca 


SPP00000630_2.0   98 PRL                          IGMDSCVIPLRHGGLSLVQT 
                     PRL                          +GMD CVIPLRHGGLSLVQT 
                     PRL          G:G[ggt]        VGMDCCVIPLRHGGLSLVQT 
BADN01057937.1 23129 cccGGTAAGGA  Intron 1   CAGGTggagttgaccacggctcgca 
                     cgt <1-----[23139:24040]-1>  tgtaggttctgaggtcttac 
                     tgc                          aggcctgttagtatcagcgc 


SPP00000630_2.0  122 TDFFYPLVEDPYMM                                    
                     TDFFYPLVEDPYMM                                    
                     TDFFYPLVEDPYMM                                    
BADN01057937.1 24103 agtttccgggctaa                                    
                     cattacttaacatt                                    
                     acccctgggtccgg                                    


//
Making a G in phase 1 intron
>BADN01057937.1.pep
MSGSTSPPPPAEAVGTEGCFPPGYKPFKPEEHGLERGFRLTAFSDLKGXGCKVPQEALLK
LLAGLGQDRADGTGKAGDQASNFGQQLPGPRLGVGMDCCVIPLRHGGLSLVQTTDFFYPL
VEDPYMM
//
>BADN01057937.1.[22862:24144].sp
ATGTCGGGCTCAACCTCCCCGCCTCCCCCGGCAGAGGCTGTGGGAACCGAGGGCTGTTTT
CCCCCCGGATACAAGCCTTTCAAACCCGAGGAGCACGGCCTGGAGCGTGGATTCCGTCTC
ACAGCCTTCTCGGACCTGAAGGGATGAGGCTGCAAGGTCCCGCAGGAGGCTCTGCTCAAA
CTCCTGGCGGGACTGGGGCAGGACCGGGCCGACGGGACAGGCAAGGCCGGAGACCAAGCA
TCAAACTTTGGCCAGCAGTTGCCCGGACCTCGGCTCGGTGTAGGGATGGACTGCTGTGTG
ATTCCTCTAAGGCATGGAGGTCTCTCACTGGTCCAGACCACAGACTTCTTCTACCCTCTG
GTGGAGGATCCCTACATGATG
//
BADN01057937.1	GeneWise	match	22862	24144	156.74	+	.	BADN01057937.1-genewise-prediction-1
BADN01057937.1	GeneWise	cds	22862	23138	0.00	+	0	BADN01057937.1-genewise-prediction-1
BADN01057937.1	GeneWise	intron	23139	24040	0.00	+	.	BADN01057937.1-genewise-prediction-1
BADN01057937.1	GeneWise	cds	24041	24144	0.00	+	2	BADN01057937.1-genewise-prediction-1
//

genewise output
Score 17.87 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000630_2.0  255 EKWNKIKLVISREEVEQAYQE                             
                     E+ NKIK V+  + +E+  Q+                             
                     ERGNKIKQVLGEKRMEKLQQK                             
BADN01057937.1-21207 gagaaaacgcggaaagaccca                             
                     aggaataattgaagtaataaa                             
                     ggataaagggaaaggagagga                             


//
>BADN01057937.1.pep
ERGNKIKQVLGEKRMEKLQQK
//
>BADN01057937.1.[21207:21143].sp
GAGAGGGGAAATAAAATAAAACAGGTGCTGGGAGAAAAAAGGATGGAAAAGCTACAGCAG
AAA
//
BADN01057937.1	GeneWise	match	21207	21145	17.87	-	.	BADN01057937.1-genewise-prediction-1
BADN01057937.1	GeneWise	cds	21207	21145	0.00	-	0	BADN01057937.1-genewise-prediction-1
//