TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000665_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Zebrafish (Danio rerio) (316 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01022579.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 81 2e-15 BADN01039777.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 76 1e-13 BADN01065248.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 56 3e-07 BADN01039778.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 55 7e-07 >BADN01022579.1 Thunnus orientalis DNA, contig: superscaffoldBa00000445_0022, whole genome shotgun sequence Length = 19638 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 63/127 (49%), Gaps = 46/127 (36%) Frame = +2 Query: 99 FSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSR------------------ 140 +S+FVGDLT EVDD L++FF ++PSC+G KVV D GNS+ Sbjct: 12014 YSLFVGDLTPEVDDGMLYEFFYNRYPSCRGGKVVLDSMGNSK*VCFNMSPHNMEKICN*Y 12193 Query: 141 ----------------------------GYGFVKFSDENEQKKALEEFQNASGLGGKPIR 172 G GFV+F DE QK+ALEE Q A GLG KP+R Sbjct: 12194 RLLSQNLSQ*SVFI*NSHTSSVCVCCCRGCGFVQFPDERLQKRALEECQGAVGLGAKPLR 12373 Query: 173 ISIAVNK 179 +S+A NK Sbjct: 12374 LSLAANK 12394 Score = 55.5 bits (132), Expect(3) = 3e-15, Method: Compositional matrix adjust. Identities = 20/33 (60%), Positives = 29/33 (87%) Frame = +2 Query: 46 GSAGYCFVEMADEASVDRCVQRLNGKLVPGSNP 78 G+ GYCFVEM DEA+ +RC++++NGK +PG+NP Sbjct: 11639 GALGYCFVEMTDEATAERCLRKINGKALPGANP 11737 Score = 44.7 bits (104), Expect(3) = 3e-15, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = +3 Query: 13 LDPYMDENFIKQAFSTMGETAFGVKIITHRVTG 45 L+ YMDE FI +AFSTMGE V+II +++TG Sbjct: 11463 LEAYMDEKFITRAFSTMGEQVVNVRIIRNKMTG 11561 Score = 23.5 bits (49), Expect(3) = 3e-15, Method: Compositional matrix adjust. Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +1 Query: 79 PRKFKLNYATYGK 91 P +FKLN AT+GK Sbjct: 11836 PTRFKLNRATFGK 11874 Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/46 (52%), Positives = 33/46 (71%) Frame = +2 Query: 270 DPNPQVDVEELNRQYMERSEELYDSLMECHWLPMDTITSDISMMNG 315 DP+P++DV E NR++ME SEELYD+L+ECHW P + T M + Sbjct: 14195 DPSPELDVVEANRKFMELSEELYDALIECHWQPAEFSTEQECMTSN 14332 >BADN01039777.1 Thunnus orientalis DNA, contig: superscaffoldBa00001026_0023, whole genome shotgun sequence Length = 20293 Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 37/44 (84%), Positives = 39/44 (88%) Frame = +3 Query: 97 PEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSR 140 PEFSVFVGDL SEVDD+QLHQ F KK+PSCKGAKVVTD YG SR Sbjct: 18219 PEFSVFVGDLASEVDDFQLHQVF-KKYPSCKGAKVVTDQYGYSR 18347 Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/44 (79%), Positives = 36/44 (81%) Frame = +1 Query: 46 GSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATY 89 GSAGYCFVE+ADEASVDRCVQRLNGKLVPGSNP L TY Sbjct: 15700 GSAGYCFVELADEASVDRCVQRLNGKLVPGSNPVSSMLLLQNTY 15831 Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/33 (87%), Positives = 31/33 (93%) Frame = +3 Query: 13 LDPYMDENFIKQAFSTMGETAFGVKIITHRVTG 45 LDPYMDENFIKQAFS MGE+ FGVKIITHR+TG Sbjct: 15114 LDPYMDENFIKQAFSAMGESPFGVKIITHRITG 15212 Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/47 (61%), Positives = 34/47 (72%) Frame = +1 Query: 133 TDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179 D RGYGFVKF +E+EQKKA+EE Q LGGKP+R+SIAV K Sbjct: 18805 ADCCLTCRGYGFVKFGEESEQKKAIEECQGTM-LGGKPLRLSIAVAK 18942 >BADN01065248.1 Thunnus orientalis DNA, contig: superscaffoldBa00002340_0009, whole genome shotgun sequence Length = 3032 Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Frame = +1 Query: 39 ITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYAT-YGKRPEPGP 97 IT + S GY FVE E D ++ +N + G + ++N A+ + K + G Sbjct: 1594 ITS*LLQSSTGYGFVEFLSEEDADYAIKIMNMIKLYG----KPIRVNKASAHNKNLDVGA 1761 Query: 98 EFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKA 156 ++F+G+L E+D+ L+ F + K++ DP GNS+GY F+ F+ + A Sbjct: 1762 --NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 1935 Query: 157 LEEFQNASGLGGKPIRISIAVNKGNK 182 +E N L +PI +S A K +K Sbjct: 1936 IEAM-NGQYLCNRPITVSYAFKKDSK 2010 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 51/114 (44%) Frame = +1 Query: 6 TSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCV 65 ++++G+LDP +DE + FS G KI+ TG S GY F+ A + D + Sbjct: 1759 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 1938 Query: 66 QRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFF 119 + +NG+ + + + G+R E + + S+ D + HQ F Sbjct: 1939 EAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQAD--RPHQLF 2094 >BADN01039778.1 Thunnus orientalis DNA, contig: superscaffoldBa00001026_0024, whole genome shotgun sequence Length = 4727 Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 32/41 (78%) Frame = +1 Query: 270 DPNPQVDVEELNRQYMERSEELYDSLMECHWLPMDTITSDI 310 +P P+ DV++ N+ +M+RSEE YD++M CHW P+D++ S I Sbjct: 475 EPIPECDVDQWNKDFMQRSEEFYDAMMNCHWEPLDSVNSPI 597 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.315 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 172,075,029 Number of extensions: 1933705 Number of successful extensions: 4940 Number of sequences better than 1.0e-02: 4 Number of HSP's gapped: 4933 Number of HSP's successfully gapped: 13 Length of query: 316 Length of database: 228,165,821 Length adjustment: 121 Effective length of query: 195 Effective length of database: 212,065,319 Effective search space: 41352737205 Effective search space used: 41352737205 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 42 (20.8 bits)