TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000626_2.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Zebrafish (Danio rerio) (232 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01116844.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 93 2e-20 BADN01114924.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 91 1e-19 BADN01022498.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 79 1e-15 BADN01102191.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 69 4e-12 BADN01114925.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 68 1e-11 BADN01022497.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 61 2e-09 BADN01022495.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 43 0.002 >BADN01116844.1 Thunnus orientalis DNA, contig: superscaffoldBa00009350_0001, whole genome shotgun sequence Length = 8276 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 42/52 (80%), Positives = 47/52 (90%) Frame = -3 Query: 181 LTEEGFGAITTEITMAKEFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPIGLK 232 LT++ FG ITTEI A+ FYYAEDYHQQYLSKNP+GYCGLGGTGVSCPIG+K Sbjct: 561 LTQQHFGPITTEIAEAQPFYYAEDYHQQYLSKNPEGYCGLGGTGVSCPIGIK 406 >BADN01114924.1 Thunnus orientalis DNA, contig: superscaffoldBa00008819_0001, whole genome shotgun sequence Length = 4951 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 41/46 (89%), Positives = 42/46 (91%) Frame = +3 Query: 67 LFGMGCFWGAERKFWRQKGVYSTQVGYSGGYTPNPTYEEVCTGKTG 112 L GMGCFWGAERKFWRQKGVYSTQVGYSGGYTPN TY+EVCTG G Sbjct: 1134 LKGMGCFWGAERKFWRQKGVYSTQVGYSGGYTPNATYKEVCTGSLG 1271 Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 21/29 (72%), Positives = 26/29 (89%) Frame = +3 Query: 41 SIKVSAKHDVNGNRTVPPFPEGLQMVLFG 69 S+ +AKHDVNGN+TVPPFPEG +MV+FG Sbjct: 738 SLSHAAKHDVNGNKTVPPFPEGTEMVMFG 824 >BADN01022498.1 Thunnus orientalis DNA, contig: superscaffoldBa00000443_0016, whole genome shotgun sequence Length = 2686 Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 33/42 (78%), Positives = 37/42 (88%) Frame = -2 Query: 69 GMGCFWGAERKFWRQKGVYSTQVGYSGGYTPNPTYEEVCTGK 110 GMGCFWGAER FWR GV+STQVGY+GG+TPNP+Y EVCTG Sbjct: 1986 GMGCFWGAERLFWRLSGVFSTQVGYAGGFTPNPSYHEVCTGD 1861 >BADN01102191.1 Thunnus orientalis DNA, contig: superscaffoldBa00006170_0005, whole genome shotgun sequence Length = 1746 Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/43 (69%), Positives = 36/43 (83%) Frame = +2 Query: 7 VRLIWRQFIQSRMGEMSSKVQMISPEEALPGREQSIKVSAKHD 49 +RL+WR FI SRMGEM+SK QM +PE ALPGR++SIKVS K D Sbjct: 323 LRLVWRHFINSRMGEMASKAQMPTPETALPGRDESIKVSGKSD 451 >BADN01114925.1 Thunnus orientalis DNA, contig: superscaffoldBa00008819_0002, whole genome shotgun sequence Length = 3720 Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/40 (75%), Positives = 35/40 (87%), Gaps = 1/40 (2%) Frame = +2 Query: 106 VCT-GKTGHTEVVRVVFEPQKIKFSELLKVFWESHNPTQG 144 +C+ G+TGHTEVVRVVF P KI F+ LLKVFWESH+PTQG Sbjct: 1970 LCSAGRTGHTEVVRVVFHPDKISFANLLKVFWESHDPTQG 2089 Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/37 (78%), Positives = 35/37 (94%) Frame = +3 Query: 144 GMRQGNDVGTTYRSSIYTNTQEQLEQALQSREEYQKV 180 GMRQGNDVGTTYRS+IYT T++QLE+AL S++EYQKV Sbjct: 3300 GMRQGNDVGTTYRSAIYTYTKQQLEEALASKDEYQKV 3410 >BADN01022497.1 Thunnus orientalis DNA, contig: superscaffoldBa00000443_0015, whole genome shotgun sequence Length = 3332 Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 46/85 (54%) Frame = -2 Query: 108 TGKTGHTEVVRVVFEPQKIKFSELLKVFWESHNPTQGMRQGNDVGTTYRSSIYTNTQEQL 167 +G TGHTEVVRVVF P+ I +LLK FWESH+PTQG S+ +T+TQ Sbjct: 955 SGLTGHTEVVRVVFSPKDISLEKLLKRFWESHDPTQG------------SNTHTHTQTHA 812 Query: 168 EQALQSREEYQKVLTEEGFGAITTE 192 Q +S+ Q G G I E Sbjct: 811 -QPHKSKSRPQIRPIPRGTGCIRAE 740 >BADN01022495.1 Thunnus orientalis DNA, contig: superscaffoldBa00000443_0013, whole genome shotgun sequence Length = 9717 Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 28/37 (75%) Frame = -2 Query: 144 GMRQGNDVGTTYRSSIYTNTQEQLEQALQSREEYQKV 180 GMRQ ND GT YRS+IYT++ Q E AL+S+ +Q+V Sbjct: 2129 GMRQQNDRGTQYRSAIYTSSPAQQELALKSKLAFQQV 2019 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.316 0.133 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 179,153,895 Number of extensions: 2405055 Number of successful extensions: 8739 Number of sequences better than 1.0e-02: 7 Number of HSP's gapped: 8736 Number of HSP's successfully gapped: 9 Length of query: 232 Length of database: 228,165,821 Length adjustment: 117 Effective length of query: 115 Effective length of database: 212,597,567 Effective search space: 24448720205 Effective search space used: 24448720205 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 41 (20.4 bits)