genewise output
Score 132.33 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000626_2.0  109 GKTGHTEVVRVVFEPQKIKFSELLKVFWESHNPTQ               
                     G+TGHTEVVRVVF P KI F+ LLKVFWESH+PTQ               
                     GRTGHTEVVRVVFHPDKISFANLLKVFWESHDPTQ               
BADN01114925.1  1982 gcagcagggaggtccgaaatgaccagttgacgcac               
                     ggcgacattgtttacaatgtcattattgagaacca               
                     tgcccagggatcctacgcctccgcatcgatccgta               


SPP00000626_2.0  144                           MRQGNDVGTTYRSSIYTNTQEQL 
                                               MRQGNDVGTTYRS+IYT T++QL 
                               G:G[ggg]        MRQGNDVGTTYRSAIYTYTKQQL 
BADN01114925.1  2087 GGTACGAC  Intron 1   CAGGGaccgagggaatctgatataaccc 
                      <1-----[2088 : 3300]-1>  tgagaatgccagcctacacaaat 
                                               gtggctcgggccccctccagggc 


SPP00000626_2.0  168 EQALQSREEYQKV                                     
                     E+AL S++EYQKV                                     
                     EEALASKDEYQKV                                     
BADN01114925.1  3372 gggcgtaggtcag                                     
                     aactccaaaaaat                                     
                     gaggccatacgga                                     


//
Making a G in phase 1 intron
>BADN01114925.1.pep
GRTGHTEVVRVVFHPDKISFANLLKVFWESHDPTQGMRQGNDVGTTYRSAIYTYTKQQLE
EALASKDEYQKV
//
>BADN01114925.1.[1982:3410].sp
GGTCGGACCGGCCACACAGAGGTGGTGAGAGTTGTCTTCCATCCAGACAAGATCAGCTTT
GCCAACCTGCTCAAAGTTTTCTGGGAAAGTCACGACCCGACTCAAGGGATGCGTCAGGGG
AACGATGTCGGGACGACGTACCGCTCCGCCATCTATACCTACACAAAGCAGCAGCTCGAG
GAAGCGCTGGCCTCCAAAGATGAATACCAGAAGGTA
//
BADN01114925.1	GeneWise	match	1982	3410	132.33	+	.	BADN01114925.1-genewise-prediction-1
BADN01114925.1	GeneWise	cds	1982	2087	0.00	+	0	BADN01114925.1-genewise-prediction-1
BADN01114925.1	GeneWise	intron	2088	3300	0.00	+	.	BADN01114925.1-genewise-prediction-1
BADN01114925.1	GeneWise	cds	3301	3410	0.00	+	2	BADN01114925.1-genewise-prediction-1
//

genewise output
Score 14.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000626_2.0  206 HQQYLSKNPDGY                                      
                     H Q+L++ P  Y                                      
                     HPQFLAEGPSHY                                      
BADN01114925.1 -3219 cccttgggctct                                      
                     acattcagccaa                                      
                     tagcgagaaatt                                      


//
>BADN01114925.1.pep
HPQFLAEGPSHY
//
>BADN01114925.1.[3219:3182].sp
CATCCACAGTTCTTGGCAGAGGGACCATCACATTAT
//
BADN01114925.1	GeneWise	match	3219	3184	14.36	-	.	BADN01114925.1-genewise-prediction-1
BADN01114925.1	GeneWise	cds	3219	3184	0.00	-	0	BADN01114925.1-genewise-prediction-1
//