genewise output
Score 146.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000626_2.0   41 SIKVSAKHDVNGNRTVPPFPEGLQMVLF                      
                     S+  +AKHDVNGN+TVPPFPEG +MV+F                      
                     SLSHAAKHDVNGNKTVPPFPEGTEMVMF          G:G[ggg]    
BADN01114924.1   738 tctcggacggagaaagcctcggagagatGGTAAGTG  Intron 1    
                     ctcaccaaatagaactcctcagcatttt <1-----[823  : 1140] 
                     tcatacactgctcgttattaagaggtgt                      


SPP00000626_2.0   69      MGCFWGAERKFWRQKGVYSTQVGYSGGYTPNPTYEEVCTGKTG  
                          MGCFWGAERKFWRQKGVYSTQVGYSGGYTPN TY+EVCTG  G  
                          MGCFWGAERKFWRQKGVYSTQVGYSGGYTPNATYKEVCTGSLG  
BADN01114924.1  1138 AAGGGagtttgggcattacaggttacggttggtacagataggtagacg  
                     -1>  tggtggcagatggaagtaccatgacggaccaccaaatgcggtg  
                          gctcgaggggtgagagttccagcccaccatccccgagcatccc  


//
Making a G in phase 1 intron
>BADN01114924.1.pep
SLSHAAKHDVNGNKTVPPFPEGTEMVMFGMGCFWGAERKFWRQKGVYSTQVGYSGGYTPN
ATYKEVCTGSLG
//
>BADN01114924.1.[738:1271].sp
TCTCTCTCACATGCAGCCAAACACGATGTGAACGGTAACAAGACTGTTCCACCTTTTCCA
GAAGGGACAGAGATGGTTATGTTTGGGATGGGCTGTTTCTGGGGAGCGGAGCGGAAGTTT
TGGAGACAGAAAGGGGTTTATTCCACCCAAGTGGGCTACTCCGGAGGCTACACACCTAAC
GCCACCTACAAGGAAGTGTGCACAGGTAGCCTCGGC
//
BADN01114924.1	GeneWise	match	738	1271	146.48	+	.	BADN01114924.1-genewise-prediction-1
BADN01114924.1	GeneWise	cds	738	822	0.00	+	0	BADN01114924.1-genewise-prediction-1
BADN01114924.1	GeneWise	intron	823	1140	0.00	+	.	BADN01114924.1-genewise-prediction-1
BADN01114924.1	GeneWise	cds	1141	1271	0.00	+	2	BADN01114924.1-genewise-prediction-1
//

genewise output
Score 15.80 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000626_2.0   57 PPFPEGLQMVLFGMGCFW                                
                     P F  G   VL  M  FW                                
                     PTFTIGQSWVLGAMDTFW                                
BADN01114924.1 -4504 cataagcttgcggagatt                                
                     cctctgacgttgctactg                                
                     attttagggtttagcatg                                


//
>BADN01114924.1.pep
PTFTIGQSWVLGAMDTFW
//
>BADN01114924.1.[4504:4449].sp
CCAACTTTTACTATTGGACAGTCGTGGGTTCTTGGTGCAATGGACACATTTTGG
//
BADN01114924.1	GeneWise	match	4504	4451	15.80	-	.	BADN01114924.1-genewise-prediction-1
BADN01114924.1	GeneWise	cds	4504	4451	0.00	-	0	BADN01114924.1-genewise-prediction-1
//