genewise output
Score 15.44 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000625_2.0   74 CFWGAE                                            
                     C WGAE                                            
                     CCWGAE                                            
BADN01022498.1   988 tttggg                                            
                     ggggca                                            
                     tcgaag                                            


//
>BADN01022498.1.pep
CCWGAE
//
>BADN01022498.1.[988:1005].sp
TGTTGCTGGGGAGCAGAG
//
BADN01022498.1	GeneWise	match	988	1005	15.44	+	.	BADN01022498.1-genewise-prediction-1
BADN01022498.1	GeneWise	cds	988	1005	0.00	+	0	BADN01022498.1-genewise-prediction-1
//

genewise output
Score 134.39 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000625_2.0   49 KHAANGNTTVEPFPDGMEMIMF                          M 
                     KHA NGN TVEPFP+GME IMF                          M 
                     KHAVNGNPTVEPFPEGMETIMF          G:G[ggt]        M 
BADN01022498.1 -2185 acggagacaggctcggagaaatGGTGAGAC  Intron 1   CAGGTa 
                     aactagacctactcagtacttt <1-----[2118 : 1986]-1>  t 
                     atgttgtctggacaacggccgt                          g 


SPP00000625_2.0   73 GCFWGAERRFWKITGVFSTQVGYAGGFTSNPTYHEVCSG           
                     GCFWGAER FW+++GVFSTQVGYAGGFT NP+YHEVC+G           
                     GCFWGAERLFWRLSGVFSTQVGYAGGFTPNPSYHEVCTG           
BADN01022498.1 -1980 gtttgggacttactggttacggtgggtacacttcggtag           
                     ggtggcagttggtcgttccatgacggtccaccaaatgcg           
                     cccgatgatcggtaacccaggccacctaaccctcgtcat           


//
Making a G in phase 1 intron
>BADN01022498.1.pep
KHAVNGNPTVEPFPEGMETIMFGMGCFWGAERLFWRLSGVFSTQVGYAGGFTPNPSYHEV
CTG
//
>BADN01022498.1.[2185:1862].sp
AAACATGCGGTTAATGGGAATCCCACTGTGGAGCCATTCCCAGAAGGCATGGAGACCATC
ATGTTTGGTATGGGCTGCTTCTGGGGAGCTGAGAGACTTTTCTGGAGGCTTTCAGGAGTC
TTCTCCACACAGGTGGGCTACGCAGGCGGCTTTACACCAAACCCCTCCTATCACGAGGTT
TGCACAGGT
//
BADN01022498.1	GeneWise	match	2185	1864	134.39	-	.	BADN01022498.1-genewise-prediction-1
BADN01022498.1	GeneWise	cds	2185	2119	0.00	-	0	BADN01022498.1-genewise-prediction-1
BADN01022498.1	GeneWise	intron	2118	1986	0.00	-	.	BADN01022498.1-genewise-prediction-1
BADN01022498.1	GeneWise	cds	1985	1864	0.00	-	2	BADN01022498.1-genewise-prediction-1
//