TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000624_2.0 # Protein # Glutathione peroxidase (GPx) # Zebrafish (Danio rerio) (191 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 205 3e-60 BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 193 8e-56 BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 175 1e-49 BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 90 7e-20 BADN01011894.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 55 6e-16 BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 58 8e-09 BADN01049899.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 55 8e-08 BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 52 9e-07 BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 49 1e-05 BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 46 8e-05 >BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00000050_0010, whole genome shotgun sequence Length = 8699 Score = 205 bits (522), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 92/117 (78%), Positives = 107/117 (91%) Frame = +3 Query: 75 QENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPSDDPVSL 134 QENCKN+EIL+SLKYVRPGNGFEP FQ+LEK++VNG++AHPLF +LKE+LP P DD ++L Sbjct: 4491 QENCKNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGKDAHPLFVYLKERLPSPCDDAMAL 4670 Query: 135 MGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLKRTK 191 M DPKFIIWSPV RND+SWNFEKFL+ PDGEP+KRYSR FLTIDI+ADIKELLKR K Sbjct: 4671 MNDPKFIIWSPVSRNDVSWNFEKFLVSPDGEPYKRYSRNFLTIDIEADIKELLKRVK 4841 Score = 120 bits (302), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 54/71 (76%), Positives = 64/71 (90%) Frame = +2 Query: 5 MKKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQGLVV 64 +++FYDL+ KLLSG+ + S+LKGKVVLIENVASL GTT RDYTQMNELHSRY+D+GLV+ Sbjct: 3446 VRRFYDLTVKLLSGETFSLSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYSDKGLVI 3625 Query: 65 LGAPCNQFGHQ 75 LG PCNQFGHQ Sbjct: 3626 LGVPCNQFGHQ 3658 >BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00000253_0034, whole genome shotgun sequence Length = 42408 Score = 193 bits (490), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 90/122 (73%), Positives = 103/122 (84%) Frame = -2 Query: 69 CNQFGHQENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPS 128 C+Q QENCKNEEIL SLKYVRPGNGFEPKFQ+LEK++VNG+N HPLF FLKE LP PS Sbjct: 17837 CHQL-MQENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKNTHPLFTFLKESLPSPS 17661 Query: 129 DDPVSLMGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLK 188 D+ + + DPK IIWSPVCRND++WNFEKFLIG DG PFKRYSRRFLT DID DI++LL Sbjct: 17660 DEQHTFLNDPKLIIWSPVCRNDVAWNFEKFLIGSDGVPFKRYSRRFLTSDIDGDIQKLLN 17481 Query: 189 RT 190 + Sbjct: 17480 QA 17475 Score = 117 bits (293), Expect = 3e-29, Method: Composition-based stats. Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 2/77 (2%) Frame = -2 Query: 1 MAGTM--KKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYA 58 + GT+ KK YD AKLL+G+ NFS+L+GKVVLI NVASL GTT RDYTQMNELH RYA Sbjct: 19259 IGGTIMAKKIYDFEAKLLTGETFNFSTLQGKVVLIVNVASL*GTTTRDYTQMNELHERYA 19080 Query: 59 DQGLVVLGAPCNQFGHQ 75 +GLV+LG PCNQFGHQ Sbjct: 19079 GKGLVILGVPCNQFGHQ 19029 >BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0014, whole genome shotgun sequence Length = 3778 Score = 175 bits (444), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 80/117 (68%), Positives = 95/117 (81%) Frame = -1 Query: 75 QENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPSDDPVSL 134 QENC N EIL L++VRPG GF+P F I EK +VNG N HP+FA+LK+KLP P DDP SL Sbjct: 3235 QENCTNGEILNLLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPYSL 3056 Query: 135 MGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLKRTK 191 M DPKF++WSP+ R DISWNFEKFLIGP+GEPFKRYS+ F TIDI+ DI+ LL+ TK Sbjct: 3055 MQDPKFLVWSPISRMDISWNFEKFLIGPEGEPFKRYSKMFPTIDIEPDIQRLLRLTK 2885 >BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0015, whole genome shotgun sequence Length = 7659 Score = 90.1 bits (222), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 44/75 (58%), Positives = 56/75 (74%) Frame = -1 Query: 1 MAGTMKKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQ 60 M K FYDL A L GD ++F+ +G+VVLIENVASL GTT RD++Q+N+L S+Y + Sbjct: 981 MTFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSQLNQLQSKYPHR 802 Query: 61 GLVVLGAPCNQFGHQ 75 LVVLG PCNQFG+Q Sbjct: 801 -LVVLGFPCNQFGYQ 760 >BADN01011894.1 Thunnus orientalis DNA, contig: superscaffoldBa00000187_0052, whole genome shotgun sequence Length = 7938 Score = 55.5 bits (132), Expect(2) = 6e-16, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 29/42 (69%) Frame = +1 Query: 80 NEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLK 121 N E L LKYVRPG GF PKF + K+EVNG N PLF +LK Sbjct: 5527 NHETLNILKYVRPGAGFVPKFPVFSKVEVNGLNEEPLFTYLK 5652 Score = 49.3 bits (116), Expect(2) = 6e-16, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 29/43 (67%) Frame = +3 Query: 127 PSDDPVSLMGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKR 169 P +PV +GD K WSP+ NDI WNFEKFLI DG PF+R Sbjct: 5751 PFVNPV--IGDIKKFYWSPIKVNDIRWNFEKFLITADGIPFRR 5873 Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 28/41 (68%) Frame = +1 Query: 6 KKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRD 46 K YD SA+ L G L+ S+ +GKV+L+ NVA+ G+T+ + Sbjct: 4693 KSIYDFSAETLDGQLVPLSNFRGKVLLVVNVATF*GSTIEE 4815 >BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00001620_0011, whole genome shotgun sequence Length = 10871 Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%) Frame = -3 Query: 25 SLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEIL 84 S +G V +I NVAS G T +YTQ+ +H+ YA++GL ++G PCNQFG Q N I Sbjct: 3753 SARGYVCIIVNVASK*GKTKVNYTQLAGMHASYAEKGLRIMGFPCNQFGGQVT*NNLMIT 3574 Query: 85 QSLKYVR 91 +V+ Sbjct: 3573 AVFVFVQ 3553 >BADN01049899.1 Thunnus orientalis DNA, contig: superscaffoldBa00001481_0015, whole genome shotgun sequence Length = 8171 Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%) Frame = -2 Query: 26 LKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQ 75 +G VV+I NVAS G T +Y+Q ++H++YA++GL +L P NQFG+Q Sbjct: 5083 FRGNVVIITNVASK*GKTPVNYSQFTQMHAKYAERGLHILAFPSNQFGNQ 4934 >BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00000378_0023, whole genome shotgun sequence Length = 10758 Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%) Frame = +3 Query: 116 LFAFLKEKLPQPSDDPVSLMGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFL 175 +F F+++ P D S + W P+ NDI WNFEKFL+GPDG+P R+ Sbjct: 3297 IFLFMQKSCPPVGD---SFNNPSDRLFWEPLKLNDIKWNFEKFLVGPDGKPLMRWHPSVS 3467 Query: 176 TIDIDADIKELL 187 + ADI++ L Sbjct: 3468 VSVVRADIRKHL 3503 Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 52/114 (45%), Gaps = 28/114 (24%) Frame = +3 Query: 3 GTMKKFYDLSAKLLSG-DLLNFSSLKGKVVLIENVASLXGTTV----------RDY---- 47 GT+ K+ +AK L+G + +NFS GK VL N A+ G T+ R Y Sbjct: 1779 GTIHKY---NAKTLNGSNTVNFSDYIGKSVLFVNTATY*GLTLQYVGKKQHHRRHYFV*Q 1949 Query: 48 -------------TQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEILQSLK 88 ++N LH GL VLG PCNQFG QE + EIL LK Sbjct: 1950 CKKTKIFYLSILLPELNALHDEMKPFGLTVLGFPCNQFGKQEPGQRHEILPGLK 2111 Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 26/38 (68%) Frame = +3 Query: 88 KYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLP 125 ++VRPGNG+ P F + EK +VNG+N +F FLK P Sbjct: 2625 RHVRPGNGYVPNFLLFEKGDVNGKNEQEVFTFLKVSFP 2738 >BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00006370_0006, whole genome shotgun sequence Length = 8336 Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 45/91 (49%) Frame = +2 Query: 30 VVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEILQSLKY 89 V L+ NVAS G T Y + +LH + VL PCNQFG QE ++EI ++ Sbjct: 5564 VSLVVNVASECGFTEEHYKDLQQLHRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRR 5743 Query: 90 VRPGNGFEPKFQILEKLEVNGENAHPLFAFL 120 V + F + K+ V G A+ ++ +L Sbjct: 5744 V-----YGVSFPLFSKIAVVGTGANNVYKYL 5821 >BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00002749_0006, whole genome shotgun sequence Length = 3280 Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 41/97 (42%) Frame = +1 Query: 32 LIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEILQSLKYVR 91 L+ NVAS T Y + ELH VL PC QFG E + +I K Sbjct: 1912 LVVNVASHSEQTETSYRSLQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAFAK--- 2082 Query: 92 PGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPS 128 + + F K+++ G A+P F FL +L S Sbjct: 2083 --STYGVTFPFFSKIKIMGSEANPAFKFLTGRLTHLS 2187 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.319 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 135,087,636 Number of extensions: 1854614 Number of successful extensions: 5981 Number of sequences better than 1.0e-02: 10 Number of HSP's gapped: 5979 Number of HSP's successfully gapped: 17 Length of query: 191 Length of database: 228,165,821 Length adjustment: 114 Effective length of query: 77 Effective length of database: 212,996,753 Effective search space: 16400749981 Effective search space used: 16400749981 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits)