TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000623_2.0 # Protein # Glutathione peroxidase (GPx) # Zebrafish (Danio rerio) (178 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01011894.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 86 5e-32 BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 102 4e-24 BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 99 5e-23 BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 98 1e-22 BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 64 4e-11 BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 60 2e-09 BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 52 6e-07 BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 50 3e-06 BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 40 0.010 >BADN01011894.1 Thunnus orientalis DNA, contig: superscaffoldBa00000187_0052, whole genome shotgun sequence Length = 7938 Score = 85.9 bits (211), Expect(2) = 5e-32, Method: Compositional matrix adjust. Identities = 37/45 (82%), Positives = 42/45 (93%) Frame = +3 Query: 117 KESLPFVNPVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKR 161 +ESLPFVNPVIGDI+K YWSPIK ND+RWNFEKFLITADG P++R Sbjct: 5739 QESLPFVNPVIGDIKKFYWSPIKVNDIRWNFEKFLITADGIPFRR 5873 Score = 73.2 bits (178), Expect(2) = 5e-32, Method: Compositional matrix adjust. Identities = 29/42 (69%), Positives = 40/42 (95%) Frame = +1 Query: 76 NHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLK 117 NHETLN+L++VRPG+GF+PKFP+FS++EVNG +E+PL+ YLK Sbjct: 5527 NHETLNILKYVRPGAGFVPKFPVFSKVEVNGLNEEPLFTYLK 5652 Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 2/76 (2%) Frame = +2 Query: 2 AANSVYDFTVETLEEKS--VSLDIFRGKVLLIMNVATFXGSTQYHRMNALMDMYGGQRFT 59 +A ++ D++ TL + V F + L++ + +F + YHR+NALM+M+G FT Sbjct: 4823 SAEALIDYSQTTLSHNT*PVQSFFFY*RYLILSSFPSF--AP*YHRLNALMEMFGDLNFT 4996 Query: 60 VLGFPCNQFGLQSPGE 75 VLGFPCNQFGLQSPG Sbjct: 4997 VLGFPCNQFGLQSPGR 5044 Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Frame = +1 Query: 1 MAANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST 41 MA S+YDF+ ETL+ + V L FRGKVLL++NVATF GST Sbjct: 4684 MANKSIYDFSAETLDGQLVPLSNFRGKVLLVVNVATF*GST 4806 >BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0014, whole genome shotgun sequence Length = 3778 Score = 102 bits (253), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 4/97 (4%) Frame = -1 Query: 70 LQSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPFVN----P 125 LQ N E LN+LQHVRPG GF P F IF + +VNG++ P++AYLK+ LP+ + Sbjct: 3238 LQENCTNGEILNLLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPYS 3059 Query: 126 VIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 ++ D + L WSPI D+ WNFEKFLI +G P+KRY Sbjct: 3058 LMQDPKFLVWSPISRMDISWNFEKFLIGPEGEPFKRY 2948 >BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00000050_0010, whole genome shotgun sequence Length = 8699 Score = 99.0 bits (245), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 4/96 (4%) Frame = +3 Query: 71 QSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPF----VNPV 126 Q +N E L L++VRPG+GF P F + +++VNG D PL+ YLKE LP + Sbjct: 4491 QENCKNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGKDAHPLFVYLKERLPSPCDDAMAL 4670 Query: 127 IGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 + D + + WSP+ NDV WNFEKFL++ DG PYKRY Sbjct: 4671 MNDPKFIIWSPVSRNDVSWNFEKFLVSPDGEPYKRY 4778 Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Frame = +2 Query: 1 MAANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--QYHRMNALMDMYGGQRF 58 MA YD TV+ L ++ SL +GKV+LI NVA+ G+T Y +MN L Y + Sbjct: 3440 MAVRRFYDLTVKLLSGETFSLSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYSDKGL 3619 Query: 59 TVLGFPCNQFGLQ 71 +LG PCNQFG Q Sbjct: 3620 VILGVPCNQFGHQ 3658 >BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00000253_0034, whole genome shotgun sequence Length = 42408 Score = 97.8 bits (242), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 4/102 (3%) Frame = -2 Query: 65 CNQFGLQSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPF-- 122 C+Q +Q +N E L L++VRPG+GF PKF + +++VNG + PL+ +LKESLP Sbjct: 17837 CHQL-MQENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKNTHPLFTFLKESLPSPS 17661 Query: 123 --VNPVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 + + D + + WSP+ NDV WNFEKFLI +DG P+KRY Sbjct: 17660 DEQHTFLNDPKLIIWSPVCRNDVAWNFEKFLIGSDGVPFKRY 17535 Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 2/73 (2%) Frame = -2 Query: 1 MAANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--QYHRMNALMDMYGGQRF 58 + A +YDF + L ++ + +GKV+LI+NVA+ G+T Y +MN L + Y G+ Sbjct: 19247 IMAKKIYDFEAKLLTGETFNFSTLQGKVVLIVNVASL*GTTTRDYTQMNELHERYAGKGL 19068 Query: 59 TVLGFPCNQFGLQ 71 +LG PCNQFG Q Sbjct: 19067 VILGVPCNQFGHQ 19029 >BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0015, whole genome shotgun sequence Length = 7659 Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Frame = -1 Query: 3 ANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--QYHRMNALMDMYGGQRFTV 60 A + YD TLE SV ++FRG+V+LI NVA+ G+T + ++N L Y R V Sbjct: 969 AKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSQLNQLQSKY-PHRLVV 793 Query: 61 LGFPCNQFGLQ 71 LGFPCNQFG Q Sbjct: 792 LGFPCNQFGYQ 760 >BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00006370_0006, whole genome shotgun sequence Length = 8336 Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Frame = +2 Query: 28 VLLIMNVATFXGSTQYH--RMNALMDMYGGQRFTVLGFPCNQFGLQSPGENHETLNVLQH 85 V L++NVA+ G T+ H + L +G F VL FPCNQFG Q PG + E + ++ Sbjct: 5564 VSLVVNVASECGFTEEHYKDLQQLHRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRR 5743 Query: 86 VRPGSGFLPKFPIFSRIEVNGSDEDPLYAYL 116 V + FP+FS+I V G+ + +Y YL Sbjct: 5744 V-----YGVSFPLFSKIAVVGTGANNVYKYL 5821 >BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00000378_0023, whole genome shotgun sequence Length = 10758 Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 50/151 (33%) Frame = +3 Query: 5 SVYDFTVETLE-EKSVSLDIFRGKVLLIMNVATF-------XGSTQYHR----------- 45 +++ + +TL +V+ + GK +L +N AT+ G Q+HR Sbjct: 1782 TIHKYNAKTLNGSNTVNFSDYIGKSVLFVNTATY*GLTLQYVGKKQHHRRHYFV*QCKKT 1961 Query: 46 -----------MNALMDMYGGQRFTVLGFPCNQFGLQSPGENHETLNVLQ------HVRP 88 +NAL D TVLGFPCNQFG Q PG+ HE L L+ H P Sbjct: 1962 KIFYLSILLPELNALHDEMKPFGLTVLGFPCNQFGKQEPGQRHEILPGLK*EISLFHCEP 2141 Query: 89 GSG--------------FLPKFPIFSRIEVN 105 G PKF +F ++V+ Sbjct: 2142 QLGQSYCTYNLLSGENLVSPKFQLFGNLKVS 2234 Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = +3 Query: 112 LYAYLKESLPFVNPVIGDIR-KLYWSPIKANDVRWNFEKFLITADGRPYKRYY 163 ++ ++++S P V + +L+W P+K ND++WNFEKFL+ DG+P R++ Sbjct: 3297 IFLFMQKSCPPVGDSFNNPSDRLFWEPLKLNDIKWNFEKFLVGPDGKPLMRWH 3455 Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 29/39 (74%) Frame = +3 Query: 84 QHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPF 122 +HVRPG+G++P F +F + +VNG +E ++ +LK S PF Sbjct: 2625 RHVRPGNGYVPNFLLFEKGDVNGKNEQEVFTFLKVSFPF 2741 >BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00002749_0006, whole genome shotgun sequence Length = 3280 Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Frame = +1 Query: 30 LIMNVATFXGSTQ--YHRMNALMDMYGGQRFTVLGFPCNQFGLQSPGENHETLNVLQHVR 87 L++NVA+ T+ Y + L G F VL FPC QFG G + + + Sbjct: 1912 LVVNVASHSEQTETSYRSLQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAFAK--- 2082 Query: 88 PGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPFVNPV 126 S + FP FS+I++ GS+ +P + +L L ++ V Sbjct: 2083 --STYGVTFPFFSKIKIMGSEANPAFKFLTGRLTHLSAV 2193 >BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00001620_0011, whole genome shotgun sequence Length = 10871 Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = -3 Query: 25 RGKVLLIMNVATFXGSTQ--YHRMNALMDMYGGQRFTVLGFPCNQFGLQ 71 RG V +I+NVA+ G T+ Y ++ + Y + ++GFPCNQFG Q Sbjct: 3747 RGYVCIIVNVASK*GKTKVNYTQLAGMHASYAEKGLRIMGFPCNQFGGQ 3601 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.322 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 133,841,541 Number of extensions: 1781238 Number of successful extensions: 5725 Number of sequences better than 1.0e-02: 9 Number of HSP's gapped: 5717 Number of HSP's successfully gapped: 18 Length of query: 178 Length of database: 228,165,821 Length adjustment: 113 Effective length of query: 65 Effective length of database: 213,129,815 Effective search space: 13853437975 Effective search space used: 13853437975 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)