TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000621_2.0 # Protein # Glutathione peroxidase (GPx) # Zebrafish (Danio rerio) (190 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 211 1e-62 BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 182 5e-52 BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 157 3e-43 BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 89 2e-19 BADN01011894.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 55 4e-17 BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 59 6e-09 BADN01049899.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 55 1e-07 BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 55 1e-07 BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 54 3e-07 BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 52 1e-06 >BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00000253_0034, whole genome shotgun sequence Length = 42408 Score = 211 bits (538), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 101/120 (84%), Positives = 108/120 (90%) Frame = -2 Query: 68 CNQFGYQENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPS 127 C+Q QENC NEEILLSLKYVRPGNG+EPKFQLLEKVDVNGKN HPLFTFLKE LP PS Sbjct: 17837 CHQL-MQENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKNTHPLFTFLKESLPSPS 17661 Query: 128 DEPMPFMSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLLS 187 DE F++DPK IIWSPVCRND+AWNFEKFLIGSDGVPFKRYSRRFLTS IDGDI+KLL+ Sbjct: 17660 DEQHTFLNDPKLIIWSPVCRNDVAWNFEKFLIGSDGVPFKRYSRRFLTSDIDGDIQKLLN 17481 Score = 117 bits (293), Expect = 2e-29, Method: Composition-based stats. Identities = 55/70 (78%), Positives = 60/70 (85%) Frame = -2 Query: 5 KSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVL 64 K YD AK LTGE F FS+LQGKVVLI NVASL GTT+RDYTQMNELHER+A KGLV+L Sbjct: 19238 KKIYDFEAKLLTGETFNFSTLQGKVVLIVNVASL*GTTTRDYTQMNELHERYAGKGLVIL 19059 Query: 65 GVPCNQFGYQ 74 GVPCNQFG+Q Sbjct: 19058 GVPCNQFGHQ 19029 >BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00000050_0010, whole genome shotgun sequence Length = 8699 Score = 182 bits (462), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 83/113 (73%), Positives = 96/113 (84%) Frame = +3 Query: 74 QENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSDEPMPF 133 QENC N+EIL SLKYVRPGNG+EP FQLLEKVDVNGK+AHPLF +LKE+LP P D+ M Sbjct: 4491 QENCKNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGKDAHPLFVYLKERLPSPCDDAMAL 4670 Query: 134 MSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLL 186 M+DPKFIIWSPV RND++WNFEKFL+ DG P+KRYSR FLT I+ DIK+LL Sbjct: 4671 MNDPKFIIWSPVSRNDVSWNFEKFLVSPDGEPYKRYSRNFLTIDIEADIKELL 4829 Score = 115 bits (289), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 51/72 (70%), Positives = 63/72 (87%) Frame = +2 Query: 3 GIKSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLV 62 ++ FYD+T K L+GE F S+L+GKVVLIENVASL GTT+RDYTQMNELH R+++KGLV Sbjct: 3443 AVRRFYDLTVKLLSGETFSLSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYSDKGLV 3622 Query: 63 VLGVPCNQFGYQ 74 +LGVPCNQFG+Q Sbjct: 3623 ILGVPCNQFGHQ 3658 >BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0014, whole genome shotgun sequence Length = 3778 Score = 157 bits (397), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 70/117 (59%), Positives = 90/117 (76%) Frame = -1 Query: 74 QENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSDEPMPF 133 QENCTN EIL L++VRPG G++P F + EK DVNG N HP+F +LK+KLP+P D+P Sbjct: 3235 QENCTNGEILNLLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPYSL 3056 Query: 134 MSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLLSIPK 190 M DPKF++WSP+ R DI+WNFEKFLIG +G PFKRYS+ F T I+ DI++LL + K Sbjct: 3055 MQDPKFLVWSPISRMDISWNFEKFLIGPEGEPFKRYSKMFPTIDIEPDIQRLLRLTK 2885 >BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0015, whole genome shotgun sequence Length = 7659 Score = 89.0 bits (219), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 41/70 (58%), Positives = 55/70 (78%) Frame = -1 Query: 5 KSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVL 64 K+FYD+ A TL G+ F+ +G+VVLIENVASL GTT+RD++Q+N+L ++ + LVVL Sbjct: 966 KTFYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSQLNQLQSKYPHR-LVVL 790 Query: 65 GVPCNQFGYQ 74 G PCNQFGYQ Sbjct: 789 GFPCNQFGYQ 760 >BADN01011894.1 Thunnus orientalis DNA, contig: superscaffoldBa00000187_0052, whole genome shotgun sequence Length = 7938 Score = 55.5 bits (132), Expect(2) = 4e-17, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 32/50 (64%) Frame = +1 Query: 71 FGYQENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLK 120 F Y N E L LKYVRPG G+ PKF + KV+VNG N PLFT+LK Sbjct: 5503 FTYTFTEVNHETLNILKYVRPGAGFVPKFPVFSKVEVNGLNEEPLFTYLK 5652 Score = 53.1 bits (126), Expect(2) = 4e-17, Method: Compositional matrix adjust. Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 4/48 (8%) Frame = +3 Query: 125 FPSDEPMPFMS----DPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKR 168 F S E +PF++ D K WSP+ NDI WNFEKFLI +DG+PF+R Sbjct: 5730 FSSQESLPFVNPVIGDIKKFYWSPIKVNDIRWNFEKFLITADGIPFRR 5873 >BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00001620_0011, whole genome shotgun sequence Length = 10871 Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 40/67 (59%) Frame = -3 Query: 24 SLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEIL 83 S +G V +I NVAS G T +YTQ+ +H +AEKGL ++G PCNQFG Q N I Sbjct: 3753 SARGYVCIIVNVASK*GKTKVNYTQLAGMHASYAEKGLRIMGFPCNQFGGQVT*NNLMIT 3574 Query: 84 LSLKYVR 90 +V+ Sbjct: 3573 AVFVFVQ 3553 >BADN01049899.1 Thunnus orientalis DNA, contig: superscaffoldBa00001481_0015, whole genome shotgun sequence Length = 8171 Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%) Frame = -2 Query: 25 LQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTN 79 +G VV+I NVAS G T +Y+Q ++H ++AE+GL +L P NQFG Q + T+ Sbjct: 5083 FRGNVVIITNVASK*GKTPVNYSQFTQMHAKYAERGLHILAFPSNQFGNQVHFTS 4919 Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 9/50 (18%) Frame = -1 Query: 82 ILLSLKYVRPGN---------GYEPKFQLLEKVDVNGKNAHPLFTFLKEK 122 I LS PGN Y +F + K+DVNG NAHPL+ ++KE+ Sbjct: 4646 IFLSFALKEPGNETQIKQFAQSYNAQFDMFSKIDVNGANAHPLWKWMKEQ 4497 >BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00000378_0023, whole genome shotgun sequence Length = 10758 Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 29/42 (69%) Frame = +3 Query: 84 LSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPF 125 L ++VRPGNGY P F L EK DVNGKN +FTFLK PF Sbjct: 2616 LDSRHVRPGNGYVPNFLLFEKGDVNGKNEQEVFTFLKVSFPF 2741 Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = +3 Query: 115 LFTFLKEKLPFPSDEPMPFMSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFL 174 +F F+++ P D F + + W P+ NDI WNFEKFL+G DG P R+ Sbjct: 3297 IFLFMQKSCPPVGDS---FNNPSDRLFWEPLKLNDIKWNFEKFLVGPDGKPLMRWHPSVS 3467 Query: 175 TSGIDGDIKKLL 186 S + DI+K L Sbjct: 3468 VSVVRADIRKHL 3503 Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 44/110 (40%), Gaps = 28/110 (25%) Frame = +3 Query: 6 SFYDITAKTLTGEE-FKFSSLQGKVVLIENVASLXGTT----------SRDY-------- 46 + + AKTL G FS GK VL N A+ G T R Y Sbjct: 1782 TIHKYNAKTLNGSNTVNFSDYIGKSVLFVNTATY*GLTLQYVGKKQHHRRHYFV*QCKKT 1961 Query: 47 ---------TQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEILLSLK 87 ++N LH+ GL VLG PCNQFG QE EIL LK Sbjct: 1962 KIFYLSILLPELNALHDEMKPFGLTVLGFPCNQFGKQEPGQRHEILPGLK 2111 >BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00006370_0006, whole genome shotgun sequence Length = 8336 Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 46/91 (50%) Frame = +2 Query: 29 VVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEILLSLKY 88 V L+ NVAS G T Y + +LH F VL PCNQFG QE +++EI ++ Sbjct: 5564 VSLVVNVASECGFTEEHYKDLQQLHRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRR 5743 Query: 89 VRPGNGYEPKFQLLEKVDVNGKNAHPLFTFL 119 V Y F L K+ V G A+ ++ +L Sbjct: 5744 V-----YGVSFPLFSKIAVVGTGANNVYKYL 5821 >BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00002749_0006, whole genome shotgun sequence Length = 3280 Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 45/102 (44%) Frame = +1 Query: 22 FSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEE 81 F+S Q +V+ NVAS T Y + ELH VL PC QFG E T+ + Sbjct: 1891 FASSQASLVV--NVASHSEQTETSYRSLQELHRELGTSHFNVLAFPCGQFGDTETGTSRD 2064 Query: 82 ILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKL 123 I K + Y F K+ + G A+P F FL +L Sbjct: 2065 IEAFAK-----STYGVTFPFFSKIKIMGSEANPAFKFLTGRL 2175 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.320 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 141,000,945 Number of extensions: 2034279 Number of successful extensions: 6310 Number of sequences better than 1.0e-02: 10 Number of HSP's gapped: 6309 Number of HSP's successfully gapped: 16 Length of query: 190 Length of database: 228,165,821 Length adjustment: 114 Effective length of query: 76 Effective length of database: 212,996,753 Effective search space: 16187753228 Effective search space used: 16187753228 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)