genewise output Score 14.85 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info tr|C3S171|C3S17 109 NGDAAHPLWKWMKEQPK NGD H L W+K++ K NGDLLH-LTYWLKKKRK BADN01052654.1 4288 aggtcc cattcaaaaa agatta tcagtaaaga ttcggc tttgaaaaga // >BADN01052654.1.pep NGDLLHLTYWLKKKRK // >BADN01052654.1.[4288:4335].sp AATGGTGACTTGCTGCACCTTACTTATTGGCTAAAAAAAAAAAGGAAA // BADN01052654.1 GeneWise match 4288 4335 14.85 + . BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise cds 4288 4335 0.00 + 0 BADN01052654.1-genewise-prediction-1 // genewise output Score 258.72 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info tr|C3S171|C3S17 1 MCAQASDWQSAKSIYEFSAIDIDGNDVSLEKY +CAQ +DWQSAKSIYEFSA DIDGN+VSLEKY QCAQVTDWQSAKSIYEFSAKDIDGNEVSLEKY BADN01052654.1 -3960 ctgcgagtcagatatgttgagaggaggtcgat agcatcagagcactaatccaatagaatctaaa gtaggttggtcgactgctcgtttccggttgac tr|C3S171|C3S17 33 GYVCIITNVASKXGKTPVNYTQL GYVCII NVASKXGKT VNYTQL R:K[aaa] GYVCIIVNVASKXGKTKVNYTQL BADN01052654.1 -3864 AAGTAAACA Intron 1 CAGAgtgtaagaggtatgaaagatacc <2-----[3862 : 3746]-2> gatgtttatccaggacataacat gtccccatactaaagcgacctga tr|C3S171|C3S17 57 AAMHVTYAEKGLRILGFPCNQFGKQ E A MH +YAEKGLRI+GFPCNQFG Q E AGMHASYAEKGLRIMGFPCNQFGGQ E BADN01052654.1 -3675 ggacgttggagtcaagtctactggcGTAACTT Intron 2 CAGg cgtaccacaagtgttgtcgaatgga<0-----[3600 : 3185]-0>a gagcccctgataccgccaccataag g tr|C3S171|C3S17 83 PGSEAEIKEFAKGYNAEFDLFSKIDVNGDAAHPLWKWMKEQPKGRGTLG PG++AEIKEFAKGYNAEFDLFSKI+VNGD AHPLWKWMK QPKG+G LG PGTDAEIKEFAKGYNAEFDLFSKIEVNGDNAHPLWKWMKAQPKGKGLLG BADN01052654.1 -3181 cgagggaagtgagtaggtgctaaaggaggagccctataagccagagccg cgcacataatcagaacatattgatatagaacactgagtacacagagttg ggtcagtagtagtctagtccctgtggtacttctggggggtgtacgatga tr|C3S171|C3S17 132 NIKWNFTK NIKWNFTK N:N[aat] NIKWNFTK BADN01052654.1 -3034 AAGTAAGTT Intron 3 CAGTaaatataa <2-----[3032 : 1294]-2> atagatca ccagccag tr|C3S171|C3S17 141 FLIDREGQVVKRYGPMDDPSV FLI+REGQVVKRYGP DDPSV FLINREGQVVKRYGPTDDPSV BADN01052654.1 -1268 GTAATTT Intron 4 CAGtcaaaggcggaatgcaggcag <0-----[1268 : 1132]-0>tttagagattagagccaacgt ctataaaggggaccaatttca // Making a K in phase 2 intron Making a N in phase 2 intron >BADN01052654.1.pep QCAQVTDWQSAKSIYEFSAKDIDGNEVSLEKYKGYVCIIVNVASKXGKTKVNYTQLAGMH ASYAEKGLRIMGFPCNQFGGQEPGTDAEIKEFAKGYNAEFDLFSKIEVNGDNAHPLWKWM KAQPKGKGLLGNNIKWNFTKFLINREGQVVKRYGPTDDPSV // >BADN01052654.1.[3960:1067].sp CAGTGTGCACAGGTGACTGATTGGCAGAGTGCCAAGTCAATCTATGAGTTCTCTGCCAAG GATATTGATGGCAACGAGGTGTCTCTTGAGAAATACAAAGGGTATGTCTGCATCATCGTA AATGTAGCCTCTAAATGAGGAAAGACCAAGGTAAACTACACTCAGCTAGCGGGAATGCAC GCCTCCTACGCTGAGAAAGGTTTACGCATCATGGGCTTCCCATGCAACCAATTTGGAGGA CAGGAGCCGGGGACTGACGCAGAGATTAAAGAGTTTGCAAAGGGTTACAATGCAGAGTTT GACCTCTTCAGTAAGATTGAGGTGAATGGAGACAATGCTCACCCTCTGTGGAAGTGGATG AAGGCTCAGCCTAAAGGCAAGGGACTTCTGGGAAATAACATCAAATGGAACTTCACAAAG TTCCTTATAAATAGAGAAGGACAGGTGGTGAAGAGATACGGCCCAACAGATGATCCTAGC GTA // BADN01052654.1 GeneWise match 3960 1069 258.72 - . BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise cds 3960 3863 0.00 - 0 BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise intron 3862 3746 0.00 - . BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise cds 3745 3601 0.00 - 1 BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise intron 3600 3185 0.00 - . BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise cds 3184 3033 0.00 - 0 BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise intron 3032 1294 0.00 - . BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise cds 1293 1269 0.00 - 1 BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise intron 1268 1132 0.00 - . BADN01052654.1-genewise-prediction-1 BADN01052654.1 GeneWise cds 1131 1069 0.00 - 0 BADN01052654.1-genewise-prediction-1 //