genewise output
Score 13.03 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

tr|D2CKK9|D2CKK  131 PLWK                                              
                     PLWK                                              
                     PLWK                                              
BADN01049899.1  7873 ctta                                              
                     ctga                                              
                     agga                                              


//
>BADN01049899.1.pep
PLWK
//
>BADN01049899.1.[7873:7884].sp
CCATTGTGGAAA
//
BADN01049899.1	GeneWise	match	7873	7884	13.03	+	.	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	cds	7873	7884	0.00	+	0	BADN01049899.1-genewise-prediction-1
//

genewise output
Score 244.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

tr|D2CKK9|D2CKK    1 MRFLGSAVVFSLVLQTM                       SAQLEDWQT 
                     MR++GSAV+FS++LQ M                       SA  EDWQT 
                     MRLIGSAVLFSVLLQAM                       SAPTEDWQT 
BADN01049899.1 -5718 accagtggcttgcccgaGTAAGAC  Intron 1   CAGtgcaggtca 
                     tgttgcctttctttact<0-----[5667 : 5278]-0>ccccaagac 
                     gcgagctctctcgggtg                       tagagcggg 


tr|D2CKK9|D2CKK   27 AKSIYEFTATDIDGNEVSLEKY                          G 
                     A SIY+F+ATDIDGN VSLEKY                          G 
                     ATSIYDFSATDIDGNLVSLEKY           R:R[agg]       G 
BADN01049899.1 -5250 gatatgttgagaggacgtcgatAGGTGACTT  Intron 2   TAGGg 
                     ccctaatcccatagattctaaa  <2-----[5182 : 5079]-2> g 
                     cgtttccagatctccgtcaaac                          g 


tr|D2CKK9|D2CKK   51 KVVIITNVASKXGKTPVNYSQFAEMHAKYSERGLRILAFPSNQFGRQ   
                      VVIITNVASKXGKTPVNYSQF +MHAKY+ERGL ILAFPSNQFG Q   
                     NVVIITNVASKXGKTPVNYSQFTQMHAKYAERGLHILAFPSNQFGNQ   
BADN01049899.1 -5074 aggaaaaggtatgaacgattctacacgatggagtcacgtctactgac   
                     attttcatccaggacctaacatcatacaacaggtattctccaatgaa   
                     ttccccttctaacacaacctgtcggccgctgatacctccttcgtgcg   


tr|D2CKK9|D2CKK   98                        EPGTNSQIKEFAKSYNAEFDMFSKID 
                                            EPG  +QIK+FA+SYNA+FDMFSKID 
                                            EPGNETQIKQFAQSYNAQFDMFSKID 
BADN01049899.1 -4933 GTACATT  Intron 3   AAGgcgagacaactgcttagctgataaag 
                     <0-----[4933 : 4623]-0>acgaacataatcacaacatattgata 
                                            gtctatgcggttgccctgccgctgct 


tr|D2CKK9|D2CKK  124 VNGDGAHPLWKWLKDQPNGKGFLG                          
                     VNG  AHPLWKW+K+QPNGKGF+G                          
                     VNGANAHPLWKWMKEQPNGKGFMG           N:N[aat]       
BADN01049899.1 -4544 gaggagccctataagccagagtagAAGTAAGTG  Intron 4       
                     tagcacactgagtaaacagagttg  <2-----[4470 : 4279]    
                     gcgcccctggggggggccgaccga                          


tr|D2CKK9|D2CKK  148     GIKWNFTK                       FLINREGQVVKRYS 
                          IKWNFTK                       FLIN+EGQVVKRY  
                         SIKWNFTK                       FLINKEGQVVKRYG 
BADN01049899.1 -4281 CAGTaaatataaGTAAATA  Intron 5   TAGttaaaggcggaatg 
                     -2> gtagatca<0-----[4253 : 3994]-0>tttaaagattagag 
                         ccggcctg                       tgccaggggggaca 


tr|D2CKK9|D2CKK  171 PLQDPSVVENDLSKY                                   
                     PL DPSV    L+ Y                                   
                     PLDDPSVRTRHLTFY                                   
BADN01049899.1 -3951 ctggcagcaaccatt                                   
                     ctaacgtgcgatcta                                   
                     cgttacataatcttc                                   


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>BADN01049899.1.pep
MRLIGSAVLFSVLLQAMSAPTEDWQTATSIYDFSATDIDGNLVSLEKYRGNVVIITNVAS
KXGKTPVNYSQFTQMHAKYAERGLHILAFPSNQFGNQEPGNETQIKQFAQSYNAQFDMFS
KIDVNGANAHPLWKWMKEQPNGKGFMGNSIKWNFTKFLINKEGQVVKRYGPLDDPSVRTR
HLTFY
//
>BADN01049899.1.[5718:3905].sp
ATGCGCCTGATAGGGTCCGCTGTCCTTTTCTCTGTCCTGCTGCAGGCTATGTCTGCACCG
ACAGAGGACTGGCAGACGGCCACGTCTATTTATGACTTCTCAGCGACAGATATCGATGGC
AACCTGGTTTCCCTAGAAAAATACAGGGGGAATGTTGTCATCATCACCAATGTTGCCTCT
AAATGAGGCAAAACCCCAGTAAACTACTCTCAGTTTACCCAGATGCACGCCAAGTACGCT
GAGAGAGGTTTACACATCCTTGCCTTCCCTTCTAACCAGTTTGGGAACCAGGAGCCTGGC
AATGAAACTCAGATCAAGCAGTTTGCTCAGTCCTACAACGCTCAGTTCGACATGTTCAGT
AAGATCGATGTGAACGGGGCCAACGCCCACCCTCTGTGGAAGTGGATGAAGGAGCAGCCC
AACGGGAAAGGCTTCATGGGAAATAGCATCAAGTGGAACTTCACTAAGTTTTTGATCAAC
AAAGAGGGGCAGGTGGTGAAGAGATACGGACCCTTGGATGATCCAAGCGTACGTACAAGA
CATCTCACTTTTTAC
//
BADN01049899.1	GeneWise	match	5718	3907	244.99	-	.	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	cds	5718	5668	0.00	-	0	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	intron	5667	5278	0.00	-	.	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	cds	5277	5183	0.00	-	0	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	intron	5182	5079	0.00	-	.	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	cds	5078	4934	0.00	-	1	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	intron	4933	4623	0.00	-	.	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	cds	4622	4471	0.00	-	0	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	intron	4470	4279	0.00	-	.	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	cds	4278	4254	0.00	-	1	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	intron	4253	3994	0.00	-	.	BADN01049899.1-genewise-prediction-1
BADN01049899.1	GeneWise	cds	3993	3907	0.00	-	0	BADN01049899.1-genewise-prediction-1
//