TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000617_2.0 # Protein # Glutathione peroxidase 3 (GPx3) # Zebrafish (Danio rerio) (222 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 112 3e-27 BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 104 2e-24 BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 103 4e-24 BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 88 7e-19 BADN01011894.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 58 1e-15 BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 61 1e-09 BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 46 1e-04 BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 44 0.001 BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 42 0.005 >BADN01020040.1 Thunnus orientalis DNA, contig: superscaffoldBa00000378_0023, whole genome shotgun sequence Length = 10758 Score = 112 bits (280), Expect = 3e-27, Method: Composition-based stats. Identities = 47/73 (64%), Positives = 60/73 (82%) Frame = +3 Query: 146 LFTFLKNACPPVGESFGATSNRLFWEPLKVNDIKWNFEKFLLDPDGRPVMRWFPRVNVSE 205 +F F++ +CPPVG+SF S+RLFWEPLK+NDIKWNFEKFL+ PDG+P+MRW P V+VS Sbjct: 3297 IFLFMQKSCPPVGDSFNNPSDRLFWEPLKLNDIKWNFEKFLVGPDGKPLMRWHPSVSVSV 3476 Query: 206 VRADILKYFHQLL 218 VRADI K+ Q+ Sbjct: 3477 VRADIRKHLLQMF 3515 Score = 105 bits (263), Expect = 6e-25, Method: Composition-based stats. Identities = 54/119 (45%), Positives = 68/119 (57%), Gaps = 28/119 (23%) Frame = +3 Query: 28 QACNSAAGDSFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQYV--------- 78 Q C+++ + H Y AKT+NG+ + FS Y GK VL VN ATY GLT QYV Sbjct: 1755 QHCDASIDGTIHKYNAKTLNGSNTVNFSDYIGKSVLFVNTATY*GLTLQYVGKKQHHRRH 1934 Query: 79 -------------------ELNALHEELRHLGFTILGFPCDQFGKQEPGENNEILSALK 118 ELNALH+E++ G T+LGFPC+QFGKQEPG+ +EIL LK Sbjct: 1935 YFV*QCKKTKIFYLSILLPELNALHDEMKPFGLTVLGFPCNQFGKQEPGQRHEILPGLK 2111 Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 28/45 (62%), Positives = 36/45 (80%) Frame = +3 Query: 147 FTFLKNACPPVGESFGATSNRLFWEPLKVNDIKWNFEKFLLDPDG 191 F F++ +CPPVG F ++RLFWEPL +++IKWNFEKFLL PDG Sbjct: 7131 FLFMQKSCPPVGNDFNNANDRLFWEPLNISNIKWNFEKFLLGPDG 7265 Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/38 (71%), Positives = 32/38 (84%) Frame = +3 Query: 118 KYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACP 155 ++VRPGNG+VPNF LFEKGDVNG EQ +FTFLK + P Sbjct: 2625 RHVRPGNGYVPNFLLFEKGDVNGKNEQEVFTFLKVSFP 2738 >BADN01004052.1 Thunnus orientalis DNA, contig: superscaffoldBa00000050_0010, whole genome shotgun sequence Length = 8699 Score = 104 bits (260), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 53/109 (48%), Positives = 67/109 (61%), Gaps = 3/109 (2%) Frame = +3 Query: 105 QEPGENNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACP-PVGESFGA 163 QE +N+EIL +LKYVRPGNGF PNFQL EK DVNG LF +LK P P ++ Sbjct: 4491 QENCKNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGKDAHPLFVYLKERLPSPCDDAMAL 4670 Query: 164 TSNRLF--WEPLKVNDIKWNFEKFLLDPDGRPVMRWFPRVNVSEVRADI 210 ++ F W P+ ND+ WNFEKFL+ PDG P R+ ++ ADI Sbjct: 4671 MNDPKFIIWSPVSRNDVSWNFEKFLVSPDGEPYKRYSRNFLTIDIEADI 4817 Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = +2 Query: 25 SNTQACNSAAGDSFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQ-YVELNAL 83 SN ++ A F++ K ++G F S GK VL+ NVA+ G T + Y ++N L Sbjct: 3419 SNPESVRMAV-RRFYDLTVKLLSGETF-SLSALKGKVVLIENVASL*GTTTRDYTQMNEL 3592 Query: 84 HEELRHLGFTILGFPCDQFGKQ 105 H G ILG PC+QFG Q Sbjct: 3593 HSRYSDKGLVILGVPCNQFGHQ 3658 >BADN01015002.1 Thunnus orientalis DNA, contig: superscaffoldBa00000253_0034, whole genome shotgun sequence Length = 42408 Score = 103 bits (258), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 57/115 (49%), Positives = 69/115 (60%), Gaps = 3/115 (2%) Frame = -2 Query: 105 QEPGENNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACP-PVGE--SF 161 QE +N EIL +LKYVRPGNGF P FQL EK DVNG LFTFLK + P P E +F Sbjct: 17822 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKNTHPLFTFLKESLPSPSDEQHTF 17643 Query: 162 GATSNRLFWEPLKVNDIKWNFEKFLLDPDGRPVMRWFPRVNVSEVRADILKYFHQ 216 + W P+ ND+ WNFEKFL+ DG P R+ R S++ DI K +Q Sbjct: 17642 LNDPKLIIWSPVCRNDVAWNFEKFLIGSDGVPFKRYSRRFLTSDIDGDIQKLLNQ 17478 Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Frame = -2 Query: 32 SAAGDSFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQ-YVELNALHEELRHL 90 + +++ AK + G F FS GK VL+VNVA+ G T + Y ++N LHE Sbjct: 19250 TIMAKKIYDFEAKLLTGETF-NFSTLQGKVVLIVNVASL*GTTTRDYTQMNELHERYAGK 19074 Query: 91 GFTILGFPCDQFGKQ 105 G ILG PC+QFG Q Sbjct: 19073 GLVILGVPCNQFGHQ 19029 >BADN01015930.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0014, whole genome shotgun sequence Length = 3778 Score = 88.2 bits (217), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 3/111 (2%) Frame = -1 Query: 105 QEPGENNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACP-PVGESFGA 163 QE N EIL+ L++VRPG GF PNF +FEK DVNG +F +LK+ P P + + Sbjct: 3235 QENCTNGEILNLLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPYSL 3056 Query: 164 TSNRLF--WEPLKVNDIKWNFEKFLLDPDGRPVMRWFPRVNVSEVRADILK 212 + F W P+ DI WNFEKFL+ P+G P R+ ++ DI + Sbjct: 3055 MQDPKFLVWSPISRMDISWNFEKFLIGPEGEPFKRYSKMFPTIDIEPDIQR 2903 >BADN01011894.1 Thunnus orientalis DNA, contig: superscaffoldBa00000187_0052, whole genome shotgun sequence Length = 7938 Score = 57.8 bits (138), Expect(2) = 1e-15, Method: Compositional matrix adjust. Identities = 27/45 (60%), Positives = 33/45 (73%) Frame = +1 Query: 110 NNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNAC 154 N+E L+ LKYVRPG GFVP F +F K +VNG E+ LFT+LK C Sbjct: 5527 NHETLNILKYVRPGAGFVPKFPVFSKVEVNGLNEEPLFTYLKVLC 5661 Score = 46.6 bits (109), Expect(2) = 1e-15, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 23/31 (74%) Frame = +3 Query: 166 NRLFWEPLKVNDIKWNFEKFLLDPDGRPVMR 196 + +W P+KVNDI+WNFEKFL+ DG P R Sbjct: 5781 KKFYWSPIKVNDIRWNFEKFLITADGIPFRR 5873 Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/33 (60%), Positives = 22/33 (66%) Frame = +2 Query: 77 YVELNALHEELRHLGFTILGFPCDQFGKQEPGE 109 Y LNAL E L FT+LGFPC+QFG Q PG Sbjct: 4946 YHRLNALMEMFGDLNFTVLGFPCNQFGLQSPGR 5044 Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 32/45 (71%) Frame = +1 Query: 34 AGDSFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQYV 78 A S +++ A+T++G Q +P S++ GK +LVVNVAT+ G T + V Sbjct: 4687 ANKSIYDFSAETLDG-QLVPLSNFRGKVLLVVNVATF*GSTIEEV 4818 >BADN01103388.1 Thunnus orientalis DNA, contig: superscaffoldBa00006370_0006, whole genome shotgun sequence Length = 8336 Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Frame = +2 Query: 63 LVVNVATYXGLTFQ-YVELNALHEELRHLGFTILGFPCDQFGKQEPGENNEILSALKYVR 121 LVVNVA+ G T + Y +L LH + F +L FPC+QFG+QEPG + EI S ++ V Sbjct: 5570 LVVNVASECGFTEEHYKDLQQLHRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRRV- 5746 Query: 122 PGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACPPVGESFGA 163 + +F LF K V G G ++ +L VGES A Sbjct: 5747 ----YGVSFPLFSKIAVVGTGANNVYKYL------VGESAAA 5842 >BADN01071155.1 Thunnus orientalis DNA, contig: superscaffoldBa00002749_0006, whole genome shotgun sequence Length = 3280 Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = +1 Query: 63 LVVNVATYXGLT-FQYVELNALHEELRHLGFTILGFPCDQFGKQEPGENNEILSALKYVR 121 LVVNVA++ T Y L LH EL F +L FPC QFG E G + +I + K Sbjct: 1912 LVVNVASHSEQTETSYRSLQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAFAK--- 2082 Query: 122 PGNGFVPNFQLFEKGDVNGDGEQALFTFL 150 + + F F K + G F FL Sbjct: 2083 --STYGVTFPFFSKIKIMGSEANPAFKFL 2163 >BADN01015931.1 Thunnus orientalis DNA, contig: superscaffoldBa00000274_0015, whole genome shotgun sequence Length = 7659 Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Frame = -1 Query: 37 SFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQ-YVELNALHEELRHLGFTIL 95 +F++ A T+ G + F+ + G+ VL+ NVA+ G T + + +LN L + H +L Sbjct: 963 TFYDLRATTLEGDS-VDFNVFRGRVVLIENVASL*GTTTRDFSQLNQLQSKYPH-RLVVL 790 Query: 96 GFPCDQFGKQ 105 GFPC+QFG Q Sbjct: 789 GFPCNQFGYQ 760 >BADN01052654.1 Thunnus orientalis DNA, contig: superscaffoldBa00001620_0011, whole genome shotgun sequence Length = 10871 Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -3 Query: 59 GKHVLVVNVATYXGLT-FQYVELNALHEELRHLGFTILGFPCDQFGKQEPGENNEILSAL 117 G ++VNVA+ G T Y +L +H G I+GFPC+QFG Q N I + Sbjct: 3744 GYVCIIVNVASK*GKTKVNYTQLAGMHASYAEKGLRIMGFPCNQFGGQVT*NNLMITAVF 3565 Query: 118 KYVR 121 +V+ Sbjct: 3564 VFVQ 3553 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.321 0.138 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 181,821,673 Number of extensions: 2514438 Number of successful extensions: 8022 Number of sequences better than 1.0e-02: 9 Number of HSP's gapped: 8019 Number of HSP's successfully gapped: 17 Length of query: 222 Length of database: 228,165,821 Length adjustment: 116 Effective length of query: 106 Effective length of database: 212,730,629 Effective search space: 22549446674 Effective search space used: 22549446674 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 41 (20.4 bits)