genewise output
Score 11.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000615_2.0   55 YNFLMERWA                                         
                     ++F +E W+                                         
                     HDFNLEEWS                                         
BADN01014294.1  2892 cgtatggta                                         
                     aatataagg                                         
                     ttccgaggt                                         


//
>BADN01014294.1.pep
HDFNLEEWS
//
>BADN01014294.1.[2892:2918].sp
CATGATTTCAACTTGGAAGAGTGGAGT
//
BADN01014294.1	GeneWise	match	2892	2918	11.99	+	.	BADN01014294.1-genewise-prediction-1
BADN01014294.1	GeneWise	cds	2892	2918	0.00	+	0	BADN01014294.1-genewise-prediction-1
//

genewise output
Score 155.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000615_2.0   47 SIKKMPELYNFLMERWAL                          HNLEY 
                     SIKKMPEL++FL+ERWAL                          HNLEY 
                     SIKKMPELHHFLLERWAL           Y:Y[tac]       HNLEY 
BADN01014294.1 -3138 aaaaacgccctctgctgtTAGTATCCT  Intron 1   TAGCcatgt 
                     gtaatcataatttaggct  <2-----[3082 : 2792]-2> aataa 
                     cagagcgctttcggagtg                          ccgat 


SPP00000615_2.0   71 DSGEDKNPRLIFYNDKDEEVK                       VVPVK 
                     DS E+KNPRLIFYN+KDE VK                        V VK 
                     DSSEEKNPRLIFYNEKDEVVK                       TVRVK 
BADN01014294.1 -2775 gttggaacccattagaggggaGTGAGAT  Intron 2   CAGagcga 
                     accaaaacgtttaaaaaatta<0-----[2712 : 1788]-0>ctgta 
                     taggggtctgactcagcgtag                       tttgg 


SPP00000615_2.0   97 KMKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAPRDEL        
                     KMKADEISSLLDSLGFYKRS+KGEEVPEEF+HFP+ APRDEL        
                     KMKADEISSLLDSLGFYKRSQKGEEVPEEFQHFPMHAPRDEL        
BADN01014294.1 -1772 aaagggaaactgtcgttaatcaggggcggtcctcacgcaggc        
                     atacaatggttactgtaagcaagaatcaataatctaccgaat        
                     aggacgcccgacactccggcgagaggaggtgtccgtccgcgg        


//
Making a Y in phase 2 intron
>BADN01014294.1.pep
SIKKMPELHHFLLERWALYHNLEYDSSEEKNPRLIFYNEKDEVVKTVRVKKMKADEISSL
LDSLGFYKRSQKGEEVPEEFQHFPMHAPRDEL
//
>BADN01014294.1.[3138:1645].sp
AGCATAAAGAAAATGCCCGAGCTCCATCATTTTCTCTTGGAGCGATGGGCTTTGTACCAC
AACTTGGAATATGATTCATCGGAGGAGAAGAATCCCCGTCTGATATTCTATAACGAAAAG
GACGAGGTTGTAAAGACTGTTCGTGTGAAGAAAATGAAGGCAGACGAGATCAGCAGCCTG
TTAGACTCACTCGGTTTCTACAAGAGGTCCCAGAAAGGGGAAGAGGTGCCAGAGGAGTTT
CAGCATTTCCCCATGCATGCCCCCAGGGACGAGCTG
//
BADN01014294.1	GeneWise	match	3138	1647	155.29	-	.	BADN01014294.1-genewise-prediction-1
BADN01014294.1	GeneWise	cds	3138	3083	0.00	-	0	BADN01014294.1-genewise-prediction-1
BADN01014294.1	GeneWise	intron	3082	2792	0.00	-	.	BADN01014294.1-genewise-prediction-1
BADN01014294.1	GeneWise	cds	2791	2713	0.00	-	1	BADN01014294.1-genewise-prediction-1
BADN01014294.1	GeneWise	intron	2712	1788	0.00	-	.	BADN01014294.1-genewise-prediction-1
BADN01014294.1	GeneWise	cds	1787	1647	0.00	-	0	BADN01014294.1-genewise-prediction-1
//