TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000614_2.0 # Protein # Iodothyronine deiodinase (DI) # Zebrafish (Danio rerio) (257 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01070230.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 283 2e-86 BADN01080856.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 167 1e-45 BADN01059959.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 160 2e-43 BADN01054393.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 68 1e-11 BADN01054394.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 49 3e-05 >BADN01070230.1 Thunnus orientalis DNA, contig: superscaffoldBa00002681_0010, whole genome shotgun sequence Length = 9428 Score = 283 bits (725), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 141/195 (72%), Positives = 158/195 (81%), Gaps = 11/195 (5%) Frame = -1 Query: 74 VKLGEAAPNSKVVKV-TGINRCWSISGKTH----------NQCHLLDFESPDRPLVVNFG 122 VKLG APNSKVVKV G ++S T+ ++CHLLDFES DRPLVVNFG Sbjct: 6410 VKLGCEAPNSKVVKVPDGPQWSSNVSNMTNVPSGARVQNGDECHLLDFESSDRPLVVNFG 6231 Query: 123 SATXPPFISQLPVFRRMVEEFSDVADFLLVYIDEAHPSDGWVGPPMENFSFEVRKHRNLE 182 SAT PPFIS LP FR++VE+FSDVADFLLVYIDEAHPSDGWV PPM SF VRKH++LE Sbjct: 6230 SAT*PPFISHLPAFRQLVEDFSDVADFLLVYIDEAHPSDGWVAPPMGACSFNVRKHQSLE 6051 Query: 183 ERMFAARTLLEHFSLPPQCQLVADCMDNNANIAYGVSYERVCIVQKNKIAYLGGKGPFFY 242 ER+ AR L++HFSLPPQCQLVADCMDNNAN+AYGVS ERVCIVQ+ KI YLGGKGPFFY Sbjct: 6050 ERLGVARKLIDHFSLPPQCQLVADCMDNNANVAYGVSNERVCIVQQKKITYLGGKGPFFY 5871 Query: 243 NLKDVRRWLEKCYGK 257 NLKDVR+WLE+ YGK Sbjct: 5870 NLKDVRQWLEQSYGK 5826 Score = 118 bits (295), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 58/75 (77%), Positives = 66/75 (88%), Gaps = 2/75 (2%) Frame = -2 Query: 4 LSVDLLVTLQILPGFFSNCLFFVLYDSIVLVKRVVSLLSCSGS--TGEWQRMLTTAGVRS 61 + +DLLVTLQI+PGFFSNCLF LYDS+VLVK +VS LSCS S +GEW RMLT+AG+RS Sbjct: 9274 MGMDLLVTLQIIPGFFSNCLFLALYDSMVLVKHIVSSLSCSRSACSGEWHRMLTSAGLRS 9095 Query: 62 IWNSFLLDAYKQVKL 76 IWNSFLLDAYKQVKL Sbjct: 9094 IWNSFLLDAYKQVKL 9050 >BADN01080856.1 Thunnus orientalis DNA, contig: superscaffoldBa00003541_0003, whole genome shotgun sequence Length = 12463 Score = 167 bits (423), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 143/250 (57%), Gaps = 8/250 (3%) Frame = -3 Query: 12 LQILPGFFSNCLFFVLYDSIVLVKRVVSLLSCSGST--------GEWQRMLTTAGVRSIW 63 L +LP F + L D + + K+V+ + + + +M T +R++W Sbjct: 932 LMLLPRFLLAAVMLWLLDFLCIRKKVLLKMGERQDSPDDPPVCVSDSNKMFTLESLRAVW 753 Query: 64 NSFLLDAYKQVKLGEAAPNSKVVKVTGINRCWSISGKTHNQCHLLDFESPDRPLVVNFGS 123 LD K LG AAPN++VV V + + +LD RPL++NFGS Sbjct: 752 YGQKLDFLKSAHLGSAAPNTEVVLV-----------QERRRVRILDCMKEKRPLILNFGS 606 Query: 124 ATXPPFISQLPVFRRMVEEFSDVADFLLVYIDEAHPSDGWVGPPMENFSFEVRKHRNLEE 183 + PPF+++L F+R++ +++D+ADFL+VYI+EAHPSDGWV + +++ KHR LE+ Sbjct: 605 CS*PPFMTRLAAFQRVMSQYADIADFLVVYIEEAHPSDGWVS---SDAPYQIPKHRCLED 435 Query: 184 RMFAARTLLEHFSLPPQCQLVADCMDNNANIAYGVSYERVCIVQKNKIAYLGGKGPFFYN 243 R+ AA+ +L P +V D MDN++N AYG +ER+ IV+ ++ Y GG+GP Y Sbjct: 434 RLSAAQLMLTEM---PGSNVVVDNMDNSSNAAYGAYFERLYIVRDERVVYQGGRGPEGYR 264 Query: 244 LKDVRRWLEK 253 + ++R WLE+ Sbjct: 263 ISELRNWLEQ 234 >BADN01059959.1 Thunnus orientalis DNA, contig: superscaffoldBa00002013_0010, whole genome shotgun sequence Length = 24398 Score = 160 bits (406), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 147/253 (58%), Gaps = 8/253 (3%) Frame = +1 Query: 9 LVTLQILPGFFSNCLFFVLYDSIVLVKRVV-SLLSCSGST-------GEWQRMLTTAGVR 60 +V L +LP F + F L D + + KRV + G + R+ + ++ Sbjct: 1576 IVCLVLLPRFLVAAVMFWLLDFLCIRKRVFFRMKEQEGDAIDPPLCISDSNRLFSFESLK 1755 Query: 61 SIWNSFLLDAYKQVKLGEAAPNSKVVKVTGINRCWSISGKTHNQCHLLDFESPDRPLVVN 120 ++W+ LD K LG APN++VV++ R +LD+ RPL++N Sbjct: 1756 AVWHGHKLDFLKAAHLGHRAPNTEVVQLEDQRRS-----------RILDYAKDKRPLILN 1902 Query: 121 FGSATXPPFISQLPVFRRMVEEFSDVADFLLVYIDEAHPSDGWVGPPMENFSFEVRKHRN 180 FGS T PPF+++L F+ +V++ +D+AD +++YI+EAHPSDGW+ + +++ KHR Sbjct: 1903 FGSCT*PPFMARLKAFQGVVQQNADIADSIVLYIEEAHPSDGWMS---TDAPYQIPKHRC 2073 Query: 181 LEERMFAARTLLEHFSLPPQCQLVADCMDNNANIAYGVSYERVCIVQKNKIAYLGGKGPF 240 LE+R+ AA+ L H + P C +V D M+N++N AYG ++R+ I+Q+ KI Y GG+GP Sbjct: 2074 LEDRLKAAQ--LMHLEV-PGCLVVVDSMENSSNAAYGAYFDRLYILQEGKIVYQGGRGPE 2244 Query: 241 FYNLKDVRRWLEK 253 Y + ++R WL++ Sbjct: 2245 GYRISELRDWLDQ 2283 >BADN01054393.1 Thunnus orientalis DNA, contig: superscaffoldBa00001708_0015, whole genome shotgun sequence Length = 28880 Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 44/57 (77%) Frame = +3 Query: 110 FESPDRPLVVNFGSATXPPFISQLPVFRRMVEEFSDVADFLLVYIDEAHPSDGWVGP 166 F + +RPLV++FGS T PPF+ +L F++++++FSDVADFL++YI EAH + W P Sbjct: 24549 FSADNRPLVLSFGSCT*PPFMYKLEEFKQLIKDFSDVADFLVIYIAEAHSTGEWKSP 24719 >BADN01054394.1 Thunnus orientalis DNA, contig: superscaffoldBa00001708_0016, whole genome shotgun sequence Length = 8239 Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 43/74 (58%) Frame = +1 Query: 160 SDGWVGPPMENFSFEVRKHRNLEERMFAARTLLEHFSLPPQCQLVADCMDNNANIAYGVS 219 SDGW +F++ +HR+LEER+ AA+ +++ P C +V D M++ I YG Sbjct: 4933 SDGWAFTN----NFDINQHRSLEERLSAAQIVVQK---EPLCPVVVDEMNDITAIKYGAL 5091 Query: 220 YERVCIVQKNKIAY 233 ER+ ++Q K+ Y Sbjct: 5092 PERLYVLQAGKVVY 5133 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.324 0.140 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 252,531,083 Number of extensions: 3996948 Number of successful extensions: 24015 Number of sequences better than 1.0e-02: 5 Number of HSP's gapped: 24002 Number of HSP's successfully gapped: 6 Length of query: 257 Length of database: 228,165,821 Length adjustment: 118 Effective length of query: 139 Effective length of database: 212,464,505 Effective search space: 29532566195 Effective search space used: 29532566195 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 42 (20.8 bits)