TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= tr|A9JRP6|A9JRP6_DANRE Iodothyronine deiodinase OS=Danio rerio GN=dio1 PE=2 SV=2 (254 letters) Database: genome.fa 133,062 sequences; 684,497,465 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BADN01080856.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 140 2e-36 BADN01059959.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 131 3e-33 BADN01054393.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 122 2e-30 BADN01070230.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 103 1e-23 BADN01054394.1 Thunnus orientalis DNA, contig: superscaffoldBa00... 88 3e-18 >BADN01080856.1 Thunnus orientalis DNA, contig: superscaffoldBa00003541_0003, whole genome shotgun sequence Length = 12463 Score = 140 bits (354), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 139/257 (54%), Gaps = 3/257 (1%) Frame = -3 Query: 1 MGSAVGFALRKLFVYISAVLMVCAA-ILQMSMLKLLSFISPGRMRKIHMKMGERSTMTQN 59 M + G + + + + LM+ +L ML LL F+ +K+ +KMGER + Sbjct: 989 MHDSGGVQMARALKHAALCLMLLPRFLLAAVMLWLLDFLCI--RKKVLLKMGERQDSPDD 816 Query: 60 PKFRYEDWGPAFFSLAFIKTLFFVNWCSLGLEAFEGHAAPDSALITL-DRQKTSVHRFLK 118 P D F+L ++ +++ A G AAP++ ++ + +R++ + +K Sbjct: 815 PPVCVSD-SNKMFTLESLRAVWYGQKLDFLKSAHLGSAAPNTEVVLVQERRRVRILDCMK 639 Query: 119 GNRPLVLSFGSCTXPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAWAFKNN-VDI 177 RPL+L+FGSC+ PPF+ +L F++++ ++++ADFL+VY+ EAH +D W + I Sbjct: 638 EKRPLILNFGSCS*PPFMTRLAAFQRVMSQYADIADFLVVYIEEAHPSDGWVSSDAPYQI 459 Query: 178 SVHKNXXXXXXXXXXXXKEDPPCPVVVDEMNNITASKYGALPERLYVIQSGKVIYQGGIG 237 H+ E P VVVD M+N + + YGA ERLY+++ +V+YQGG G Sbjct: 458 PKHRCLEDRLSAAQLMLTEMPGSNVVVDNMDNSSNAAYGAYFERLYIVRDERVVYQGGRG 279 Query: 238 PWGYKPEEVRKVLEKSK 254 P GY+ E+R LE+ + Sbjct: 278 PEGYRISELRNWLEQYR 228 >BADN01059959.1 Thunnus orientalis DNA, contig: superscaffoldBa00002013_0010, whole genome shotgun sequence Length = 24398 Score = 131 bits (329), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 2/226 (0%) Frame = +1 Query: 31 MLKLLSFISPGRMRKIHMKMGERSTMTQNPKFRYEDWGPAFFSLAFIKTLFFVNWCSLGL 90 M LL F+ +++ +M E+ +P D FS +K ++ + Sbjct: 1621 MFWLLDFLCI--RKRVFFRMKEQEGDAIDPPLCISD-SNRLFSFESLKAVWHGHKLDFLK 1791 Query: 91 EAFEGHAAPDSALITL-DRQKTSVHRFLKGNRPLVLSFGSCTXPPFLYKLDEFKQLVKDF 149 A GH AP++ ++ L D++++ + + K RPL+L+FGSCT PPF+ +L F+ +V+ Sbjct: 1792 AAHLGHRAPNTEVVQLEDQRRSRILDYAKDKRPLILNFGSCT*PPFMARLKAFQGVVQQN 1971 Query: 150 SNVADFLIVYLAEAHATDAWAFKNN-VDISVHKNXXXXXXXXXXXXKEDPPCPVVVDEMN 208 +++AD +++Y+ EAH +D W + I H+ E P C VVVD M Sbjct: 1972 ADIADSIVLYIEEAHPSDGWMSTDAPYQIPKHRCLEDRLKAAQLMHLEVPGCLVVVDSME 2151 Query: 209 NITASKYGALPERLYVIQSGKVIYQGGIGPWGYKPEEVRKVLEKSK 254 N + + YGA +RLY++Q GK++YQGG GP GY+ E+R L++ + Sbjct: 2152 NSSNAAYGAYFDRLYILQEGKIVYQGGRGPEGYRISELRDWLDQYR 2289 >BADN01054393.1 Thunnus orientalis DNA, contig: superscaffoldBa00001708_0015, whole genome shotgun sequence Length = 28880 Score = 122 bits (307), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/123 (52%), Positives = 86/123 (69%), Gaps = 2/123 (1%) Frame = +1 Query: 9 LRKLFVYISAVLMVCAAILQMSMLKLLSFISPGRMRKIHMKMGERSTMTQNPKFRYEDWG 68 L+KL VY+SA + C A+ ML ++ FISP +K ++MGE++TMTQNPKFRYEDWG Sbjct: 24148 LQKLMVYLSAACLFCFAVALNFMLSIMHFISPSLTKKQILRMGEKTTMTQNPKFRYEDWG 24327 Query: 69 PAFFSLAFIKTLFFVNWCSLGLEAFEGHAAPDSALITLDRQKTSVHRFLKGN-RPLVLS- 126 F SL+FIKT+ W SLG EAF G APDS ++T++ +KTS+ +F KG R L LS Sbjct: 24328 LTFTSLSFIKTVSQHMWLSLGQEAFVGGEAPDSPVVTMEGEKTSIFKFFKGALRRLKLSG 24507 Query: 127 FGS 129 +GS Sbjct: 24508 YGS 24516 Score = 92.4 bits (228), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 40/54 (74%), Positives = 48/54 (88%) Frame = +3 Query: 116 FLKGNRPLVLSFGSCTXPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAW 169 F NRPLVLSFGSCT PPF+YKL+EFKQL+KDFS+VADFL++Y+AEAH+T W Sbjct: 24549 FSADNRPLVLSFGSCT*PPFMYKLEEFKQLIKDFSDVADFLVIYIAEAHSTGEW 24710 >BADN01070230.1 Thunnus orientalis DNA, contig: superscaffoldBa00002681_0010, whole genome shotgun sequence Length = 9428 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 7/145 (4%) Frame = -1 Query: 116 FLKGNRPLVLSFGSCTXPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAWAFK--N 173 F +RPLV++FGS T PPF+ L F+QLV+DFS+VADFL+VY+ EAH +D W Sbjct: 6269 FESSDRPLVVNFGSAT*PPFISHLPAFRQLVEDFSDVADFLLVYIDEAHPSDGWVAPPMG 6090 Query: 174 NVDISVHKNXXXXXXXXXXXXKED-----PPCPVVVDEMNNITASKYGALPERLYVIQSG 228 +V K+ D P C +V D M+N YG ER+ ++Q Sbjct: 6089 ACSFNVRKHQSLEERLGVARKLIDHFSLPPQCQLVADCMDNNANVAYGVSNERVCIVQQK 5910 Query: 229 KVIYQGGIGPWGYKPEEVRKVLEKS 253 K+ Y GG GP+ Y ++VR+ LE+S Sbjct: 5909 KITYLGGKGPFFYNLKDVRQWLEQS 5835 >BADN01054394.1 Thunnus orientalis DNA, contig: superscaffoldBa00001708_0016, whole genome shotgun sequence Length = 8239 Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 38/68 (55%), Positives = 50/68 (73%) Frame = +1 Query: 166 TDAWAFKNNVDISVHKNXXXXXXXXXXXXKEDPPCPVVVDEMNNITASKYGALPERLYVI 225 +D WAF NN DI+ H++ +++P CPVVVDEMN+ITA KYGALPERLYV+ Sbjct: 4933 SDGWAFTNNFDINQHRSLEERLSAAQIVVQKEPLCPVVVDEMNDITAIKYGALPERLYVL 5112 Query: 226 QSGKVIYQ 233 Q+GKV+Y+ Sbjct: 5113 QAGKVVYK 5136 Database: genome.fa Posted date: Oct 9, 2014 7:00 PM Number of letters in database: 684,497,465 Number of sequences in database: 133,062 Lambda K H 0.324 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 133062 Number of Hits to DB: 187,790,984 Number of extensions: 2505445 Number of successful extensions: 9466 Number of sequences better than 1.0e-02: 5 Number of HSP's gapped: 9461 Number of HSP's successfully gapped: 6 Length of query: 254 Length of database: 228,165,821 Length adjustment: 118 Effective length of query: 136 Effective length of database: 212,464,505 Effective search space: 28895172680 Effective search space used: 28895172680 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 42 (20.8 bits)