genewise output
Score 215.04 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

tr|A9JRP6|A9JRP    9 LRKLFVYISAVLMVCAAILQMSMLKLLSFISPGRMRKIHMKMGERSTMT 
                     L+KL+VY+SA  + C A+    ML ++ FISP   +K  ++MGE++TMT 
                     LQKLMVYLSAACLFCFAVALNFMLSIMHFISPSLTKKQILRMGEKTTMT 
BADN01054393.1 24148 tcacagtctggtttttgggcatacaaactatcacaaacacaaggaaaaa 
                     taatttatcccgttgtctctatttgttattccgtcaaattgtgaacctc 
                     gaaggcctgaacgtctgagttcgcccgtttaacccggaccagcagccgc 


tr|A9JRP6|A9JRP   58 QNPKFRYEDWGPAFFSLAFIKTLFFVNWCSLGLEAFEGHAAPDSALITL 
                     QNPKFRYEDWG  F SL+FIKT+    W SLG EAF G  APDS ++T+ 
                     QNPKFRYEDWGLTFTSLSFIKTVSQHMWLSLGQEAFVGGEAPDSPVVTM 
BADN01054393.1 24295 cacatatggtgcatattataaagtccatctcgcggtgggggcgtcggaa 
                     aacatgaaaggtctcctgttactcaatgtctgaacttggaccaccttct 
                     gcagcacgtgtgatatacccacctgcgggtcgaggtgcagtccacgccg 


tr|A9JRP6|A9JRP  107 DRQKTSVHRFLK                          NRPLVLSFGSC 
                     + +KTS+ +F K                          NRPLVLSFGSC 
                     EGEKTSIFKFFK          G:D[gat]        NRPLVLSFGSC 
BADN01054393.1 24442 gggaaaatattaGGTGCGTT  Intron 1   CAGATaactgcatgat 
                     agaacgttatta <1-----[24479:24558]-1>  agctttgtggg 
                     gagaacccgcta                          taggggttatc 


tr|A9JRP6|A9JRP  131 TXPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAW           
                     TXPPF+YKL+EFKQL+KDFS+VADFL++Y+AEAH+T  W           
                     TXPPFMYKLEEFKQLIKDFSDVADFLVIYIAEAHSTGEW           
BADN01054393.1 24594 atcctatacggtaccaagtaggggtcgatagggctaggt           
                     cgccttaataataattaatgatcattttatcacaccgag           
                     caagtgcatggcgaccgccctgtcttcccccggtaatgg           


//
Making a D in phase 1 intron
>BADN01054393.1.pep
LQKLMVYLSAACLFCFAVALNFMLSIMHFISPSLTKKQILRMGEKTTMTQNPKFRYEDWG
LTFTSLSFIKTVSQHMWLSLGQEAFVGGEAPDSPVVTMEGEKTSIFKFFKDNRPLVLSFG
SCTXPPFMYKLEEFKQLIKDFSDVADFLVIYIAEAHSTGEW
//
>BADN01054393.1.[24148:24710].sp
TTGCAAAAACTGATGGTCTACCTTTCGGCAGCATGCTTGTTTTGCTTTGCGGTAGCGCTT
AATTTCATGCTCAGCATCATGCATTTTATTTCACCAAGCCTCACCAAGAAGCAAATCCTC
AGAATGGGCGAAAAGACCACCATGACCCAGAACCCAAAGTTCAGATACGAGGATTGGGGT
CTGACATTTACATCTTTAAGCTTCATCAAAACCGTCTCTCAGCACATGTGGCTGTCTCTC
GGGCAAGAGGCGTTTGTGGGCGGAGAGGCTCCCGACTCACCCGTGGTCACCATGGAGGGA
GAGAAAACAAGCATCTTCAAGTTCTTTAAAGATAATAGACCGTTGGTGCTGAGTTTTGGA
AGTTGCACCTGACCACCGTTTATGTACAAACTTGAGGAGTTCAAGCAACTCATCAAGGAC
TTCAGCGATGTGGCTGACTTTCTTGTCATCTACATCGCCGAGGCGCATTCAACAGGTGAG
TGG
//
BADN01054393.1	GeneWise	match	24148	24710	215.04	+	.	BADN01054393.1-genewise-prediction-1
BADN01054393.1	GeneWise	cds	24148	24478	0.00	+	0	BADN01054393.1-genewise-prediction-1
BADN01054393.1	GeneWise	intron	24479	24558	0.00	+	.	BADN01054393.1-genewise-prediction-1
BADN01054393.1	GeneWise	cds	24559	24710	0.00	+	2	BADN01054393.1-genewise-prediction-1
//

genewise output
Score 17.52 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

tr|A9JRP6|A9JRP  123 LVLSFGSCTXPP                                      
                     + ++F +CT PP                                      
                     ITVTFSACTIPP                                      
BADN01054393.1-15342 aagattgtaacc                                      
                     tctctccgctcc                                      
                     ctgttttttttg                                      


//
>BADN01054393.1.pep
ITVTFSACTIPP
//
>BADN01054393.1.[15342:15305].sp
ATCACTGTGACTTTTTCTGCTTGTACTATTCCTCCG
//
BADN01054393.1	GeneWise	match	15342	15307	17.52	-	.	BADN01054393.1-genewise-prediction-1
BADN01054393.1	GeneWise	cds	15342	15307	0.00	-	0	BADN01054393.1-genewise-prediction-1
//